| UniProt: | P00448 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10953 | ||
| Length: | 206 (200) | ||
| Sequences: | 2213 | ||
| Seq/Len: | 11.06 |
| SODM
Paralog alert: 0.40 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: SODF SODM |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 33_Q | 37_N | 4.634 | 1.00 | |
| 181_R | 184_D | 3.066 | 1.00 | |
| 112_N | 115_A | 3.033 | 1.00 | |
| 99_L | 199_A | 2.745 | 1.00 | |
| 197_E | 200_A | 2.655 | 1.00 | |
| 38_N | 41_A | 2.53 | 1.00 | |
| 167_L | 186_I | 2.438 | 1.00 | |
| 100_K | 104_E | 2.406 | 1.00 | |
| 135_K | 140_A | 2.387 | 1.00 | |
| 101_A | 104_E | 2.337 | 1.00 | |
| 22_Q | 179_Q | 2.318 | 1.00 | |
| 197_E | 201_R | 2.282 | 1.00 | |
| 21_K | 25_E | 2.282 | 1.00 | |
| 115_A | 119_K | 2.13 | 1.00 | |
| 121_A | 130_A | 2.125 | 1.00 | |
| 102_A | 202_F | 2.113 | 1.00 | |
| 112_N | 116_E | 2.112 | 1.00 | |
| 19_F | 85_F | 2.081 | 1.00 | |
| 18_H | 191_N | 2.049 | 1.00 | |
| 184_D | 187_K | 2.017 | 1.00 | |
| 121_A | 167_L | 1.981 | 1.00 | |
| 20_D | 177_K | 1.949 | 1.00 | |
| 12_Y | 29_T | 1.914 | 1.00 | |
| 36_V | 79_H | 1.907 | 1.00 | |
| 53_P | 56_E | 1.895 | 1.00 | |
| 41_A | 44_E | 1.892 | 1.00 | |
| 37_N | 41_A | 1.883 | 1.00 | |
| 106_D | 138_K | 1.84 | 1.00 | |
| 119_K | 123_S | 1.833 | 1.00 | |
| 122_A | 186_I | 1.796 | 1.00 | |
| 89_L | 189_F | 1.793 | 1.00 | |
| 124_R | 143_S | 1.79 | 1.00 | |
| 165_M | 198_A | 1.785 | 1.00 | |
| 102_A | 105_R | 1.743 | 1.00 | |
| 87_K | 197_E | 1.726 | 1.00 | |
| 118_E | 187_K | 1.654 | 1.00 | |
| 199_A | 203_A | 1.645 | 1.00 | |
| 133_V | 142_V | 1.615 | 1.00 | |
| 121_A | 186_I | 1.606 | 1.00 | |
| 113_F | 117_F | 1.581 | 1.00 | |
| 13_D | 21_K | 1.564 | 1.00 | |
| 176_L | 179_Q | 1.561 | 1.00 | |
| 4_T | 7_S | 1.549 | 1.00 | |
| 79_H | 83_S | 1.546 | 1.00 | |
| 116_E | 119_K | 1.539 | 1.00 | |
| 88_G | 198_A | 1.488 | 1.00 | |
| 111_D | 114_K | 1.484 | 1.00 | |
| 39_A | 76_A | 1.484 | 1.00 | |
| 32_H | 86_W | 1.482 | 1.00 | |
| 118_E | 122_A | 1.468 | 1.00 | |
| 94_T | 111_D | 1.452 | 1.00 | |
| 196_D | 199_A | 1.433 | 1.00 | |
| 6_P | 83_S | 1.425 | 1.00 | |
| 98_D | 203_A | 1.408 | 1.00 | |
| 167_L | 189_F | 1.394 | 0.99 | |
| 200_A | 204_A | 1.383 | 0.99 | |
| 117_F | 167_L | 1.362 | 0.99 | |
| 52_L | 60_K | 1.362 | 0.99 | |
| 22_Q | 25_E | 1.356 | 0.99 | |
| 38_N | 75_N | 1.337 | 0.99 | |
| 24_M | 85_F | 1.302 | 0.99 | |
| 11_A | 14_A | 1.299 | 0.99 | |
| 118_E | 186_I | 1.293 | 0.99 | |
| 124_R | 130_A | 1.284 | 0.99 | |
| 25_E | 29_T | 1.283 | 0.99 | |
| 5_L | 28_H | 1.278 | 0.99 | |
| 101_A | 105_R | 1.263 | 0.99 | |
| 133_V | 140_A | 1.262 | 0.99 | |
| 110_V | 113_F | 1.261 | 0.99 | |
| 169_V | 182_R | 1.248 | 0.99 | |
| 131_W | 144_T | 1.238 | 0.98 | |
| 98_D | 101_A | 1.233 | 0.98 | |
| 135_K | 161_G | 1.224 | 0.98 | |
| 122_A | 183_P | 1.211 | 0.98 | |
| 190_W | 193_V | 1.209 | 0.98 | |
| 178_F | 188_E | 1.208 | 0.98 | |
| 87_K | 201_R | 1.206 | 0.98 | |
| 134_L | 202_F | 1.191 | 0.98 | |
| 102_A | 106_D | 1.184 | 0.98 | |
| 98_D | 199_A | 1.176 | 0.98 | |
| 39_A | 72_L | 1.174 | 0.98 | |
| 115_A | 187_K | 1.171 | 0.98 | |
| 174_Y | 182_R | 1.16 | 0.97 | |
| 3_Y | 39_A | 1.152 | 0.97 | |
| 189_F | 193_V | 1.147 | 0.97 | |
| 113_F | 141_V | 1.146 | 0.97 | |
| 77_G | 147_Q | 1.14 | 0.97 | |
| 12_Y | 28_H | 1.126 | 0.97 | |
| 193_V | 198_A | 1.124 | 0.97 | |
| 107_F | 116_E | 1.12 | 0.96 | |
| 96_Q | 199_A | 1.117 | 0.96 | |
| 164_I | 198_A | 1.095 | 0.96 | |
| 23_T | 177_K | 1.087 | 0.96 | |
| 30_K | 181_R | 1.084 | 0.96 | |
| 34_T | 38_N | 1.078 | 0.95 | |
| 9_P | 87_K | 1.068 | 0.95 | |
| 109_S | 112_N | 1.064 | 0.95 | |
| 52_L | 56_E | 1.06 | 0.95 | |
| 12_Y | 25_E | 1.054 | 0.95 | |
| 99_L | 103_I | 1.051 | 0.94 | |
| 12_Y | 21_K | 1.049 | 0.94 | |
| 114_K | 191_N | 1.048 | 0.94 | |
| 117_F | 189_F | 1.047 | 0.94 | |
| 85_F | 185_Y | 1.046 | 0.94 | |
| 99_L | 198_A | 1.045 | 0.94 | |
| 44_E | 50_A | 1.045 | 0.94 | |
| 120_A | 141_V | 1.044 | 0.94 | |
| 118_E | 190_W | 1.043 | 0.94 | |
| 26_I | 179_Q | 1.043 | 0.94 | |
| 140_A | 161_G | 1.04 | 0.94 | |
| 94_T | 104_E | 1.024 | 0.93 | |
| 3_Y | 43_L | 1.02 | 0.93 | |
| 130_A | 143_S | 1.02 | 0.93 | |
| 80_A | 149_S | 1.014 | 0.93 | |
| 45_S | 50_A | 1.005 | 0.93 | |
| 84_L | 197_E | 1.004 | 0.93 | |
| 120_A | 130_A | 1.002 | 0.92 | |
| 94_T | 100_K | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1gv3A | 2 | 0.9709 | 100 | -0.023 | Contact Map | 0.782 |
| 3tjtA | 1 | 0.9709 | 100 | -0.022 | Contact Map | 0.75 |
| 2rcvA | 8 | 0.9709 | 100 | -0.02 | Contact Map | 0.806 |
| 1mngA | 2 | 0.966 | 100 | -0.019 | Contact Map | 0.777 |
| 1xreA | 2 | 0.9709 | 100 | -0.013 | Contact Map | 0.811 |
| 1ix9A | 2 | 0.9854 | 100 | -0.01 | Contact Map | 0.734 |
| 3kkyA | 2 | 0.9951 | 100 | -0.01 | Contact Map | 0.801 |
| 2cw2A | 2 | 0.932 | 100 | 0.007 | Contact Map | 0.797 |
| 2awpA | 2 | 0.932 | 100 | 0.008 | Contact Map | 0.781 |
| 3tqjA | 2 | 0.932 | 100 | 0.01 | Contact Map | 0.8 |
Sequence Conservation (Image Generated using WebLogo v3)