| UniProt: | P0AGB3 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10897 | ||
| Length: | 284 (271) | ||
| Sequences: | 3519 | ||
| Seq/Len: | 12.99 |
| RPOH
Paralog alert: 0.72 [within 20: 0.07] - ratio of genomes with paralogs Cluster includes: FLIA RPOH RPOS |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 237_Q | 241_R | 4.222 | 1.00 | |
| 151_Q | 156_M | 3.549 | 1.00 | |
| 50_A | 91_R | 3.471 | 1.00 | |
| 61_V | 82_G | 3.47 | 1.00 | |
| 262_V | 267_V | 3.322 | 1.00 | |
| 155_E | 165_S | 3.279 | 1.00 | |
| 40_K | 46_D | 3.266 | 1.00 | |
| 33_E | 52_T | 2.994 | 1.00 | |
| 51_K | 55_L | 2.827 | 1.00 | |
| 145_R | 160_E | 2.779 | 1.00 | |
| 238_D | 259_R | 2.756 | 1.00 | |
| 36_A | 40_K | 2.716 | 1.00 | |
| 266_R | 269_Q | 2.637 | 1.00 | |
| 260_Y | 267_V | 2.447 | 1.00 | |
| 60_F | 102_V | 2.153 | 1.00 | |
| 236_S | 277_K | 2.15 | 1.00 | |
| 146_L | 149_F | 2.094 | 1.00 | |
| 242_A | 259_R | 2.08 | 1.00 | |
| 243_R | 271_E | 2.074 | 1.00 | |
| 230_Q | 237_Q | 2.04 | 1.00 | |
| 242_A | 251_S | 1.961 | 1.00 | |
| 157_V | 168_V | 1.955 | 1.00 | |
| 239_I | 270_L | 1.937 | 1.00 | |
| 254_Q | 258_D | 1.877 | 1.00 | |
| 39_E | 43_Y | 1.844 | 1.00 | |
| 58_L | 83_N | 1.828 | 1.00 | |
| 130_K | 133_R | 1.824 | 1.00 | |
| 54_I | 87_M | 1.818 | 1.00 | |
| 233_D | 277_K | 1.814 | 1.00 | |
| 239_I | 274_A | 1.813 | 1.00 | |
| 238_D | 260_Y | 1.801 | 1.00 | |
| 209_A | 213_E | 1.8 | 1.00 | |
| 142_T | 160_E | 1.75 | 1.00 | |
| 52_T | 56_S | 1.732 | 1.00 | |
| 231_G | 281_A | 1.714 | 1.00 | |
| 94_N | 97_V | 1.706 | 1.00 | |
| 92_R | 104_F | 1.699 | 1.00 | |
| 155_E | 159_R | 1.685 | 1.00 | |
| 241_R | 246_D | 1.681 | 1.00 | |
| 30_S | 33_E | 1.649 | 1.00 | |
| 265_E | 268_R | 1.649 | 1.00 | |
| 129_T | 132_Q | 1.632 | 1.00 | |
| 238_D | 242_A | 1.629 | 1.00 | |
| 149_F | 153_E | 1.601 | 1.00 | |
| 251_S | 259_R | 1.58 | 1.00 | |
| 35_R | 39_E | 1.567 | 1.00 | |
| 20_I | 23_A | 1.562 | 1.00 | |
| 164_T | 167_D | 1.548 | 1.00 | |
| 64_I | 106_V | 1.528 | 1.00 | |
| 60_F | 103_S | 1.508 | 1.00 | |
| 154_V | 168_V | 1.495 | 1.00 | |
| 65_A | 79_I | 1.465 | 1.00 | |
| 19_Y | 23_A | 1.459 | 1.00 | |
| 31_A | 35_R | 1.444 | 1.00 | |
| 40_K | 44_H | 1.437 | 1.00 | |
| 265_E | 269_Q | 1.425 | 1.00 | |
| 19_Y | 83_N | 1.414 | 1.00 | |
| 23_A | 62_V | 1.402 | 0.99 | |
| 154_V | 165_S | 1.397 | 0.99 | |
| 234_E | 237_Q | 1.389 | 0.99 | |
| 81_E | 116_Y | 1.38 | 0.99 | |
| 154_V | 169_R | 1.352 | 0.99 | |
| 150_N | 153_E | 1.336 | 0.99 | |
| 101_L | 105_A | 1.328 | 0.99 | |
| 146_L | 153_E | 1.328 | 0.99 | |
| 158_A | 165_S | 1.318 | 0.99 | |
| 46_D | 49_A | 1.297 | 0.99 | |
| 142_T | 146_L | 1.293 | 0.99 | |
| 64_I | 113_I | 1.288 | 0.99 | |
| 137_F | 141_K | 1.28 | 0.99 | |
| 266_R | 270_L | 1.255 | 0.99 | |
| 133_R | 137_F | 1.25 | 0.99 | |
| 234_E | 238_D | 1.22 | 0.98 | |
| 158_A | 163_V | 1.215 | 0.98 | |
| 253_L | 265_E | 1.215 | 0.98 | |
| 48_E | 51_K | 1.212 | 0.98 | |
| 253_L | 257_A | 1.211 | 0.98 | |
| 90_V | 101_L | 1.206 | 0.98 | |
| 18_S | 22_A | 1.206 | 0.98 | |
| 159_R | 162_G | 1.189 | 0.98 | |
| 153_E | 156_M | 1.181 | 0.98 | |
| 57_H | 102_V | 1.176 | 0.98 | |
| 142_T | 145_R | 1.174 | 0.98 | |
| 62_V | 79_I | 1.171 | 0.98 | |
| 33_E | 36_A | 1.165 | 0.97 | |
| 47_L | 51_K | 1.163 | 0.97 | |
| 132_Q | 138_N | 1.144 | 0.97 | |
| 100_R | 103_S | 1.143 | 0.97 | |
| 135_L | 163_V | 1.141 | 0.97 | |
| 66_R | 75_Q | 1.14 | 0.97 | |
| 89_A | 105_A | 1.139 | 0.97 | |
| 138_N | 142_T | 1.132 | 0.97 | |
| 167_D | 170_E | 1.128 | 0.97 | |
| 253_L | 264_A | 1.123 | 0.97 | |
| 39_E | 96_E | 1.116 | 0.96 | |
| 138_N | 141_K | 1.109 | 0.96 | |
| 240_I | 278_L | 1.108 | 0.96 | |
| 23_A | 26_W | 1.106 | 0.96 | |
| 253_L | 266_R | 1.101 | 0.96 | |
| 253_L | 268_R | 1.096 | 0.96 | |
| 21_R | 26_W | 1.093 | 0.96 | |
| 253_L | 269_Q | 1.086 | 0.96 | |
| 110_K | 114_H | 1.086 | 0.96 | |
| 196_A | 199_L | 1.085 | 0.96 | |
| 65_A | 75_Q | 1.075 | 0.95 | |
| 63_H | 66_R | 1.071 | 0.95 | |
| 79_I | 83_N | 1.061 | 0.95 | |
| 222_A | 226_T | 1.061 | 0.95 | |
| 53_L | 90_V | 1.053 | 0.95 | |
| 103_S | 106_V | 1.051 | 0.94 | |
| 48_E | 52_T | 1.042 | 0.94 | |
| 235_R | 239_I | 1.041 | 0.94 | |
| 236_S | 273_N | 1.039 | 0.94 | |
| 65_A | 113_I | 1.037 | 0.94 | |
| 26_W | 56_S | 1.023 | 0.93 | |
| 133_R | 140_R | 1.019 | 0.93 | |
| 270_L | 274_A | 1.017 | 0.93 | |
| 158_A | 168_V | 1.012 | 0.93 | |
| 84_I | 87_M | 1.01 | 0.93 | |
| 42_H | 96_E | 1.004 | 0.93 | |
| 132_Q | 137_F | 1.003 | 0.93 | |
| 254_Q | 264_A | 1.002 | 0.92 | |
| 239_I | 260_Y | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1l9zH | 1 | 0.9648 | 100 | 0.289 | Contact Map | 0.067 |
| 2a6hF | 2 | 0.9648 | 100 | 0.29 | Contact Map | 0.535 |
| 4kn7X | 2 | 0.9613 | 100 | 0.401 | Contact Map | 0.582 |
| 4ljzF | 2 | 0.9613 | 100 | 0.404 | Contact Map | 0.587 |
| 1l0oC | 1 | 0.8486 | 100 | 0.544 | Contact Map | 0.808 |
| 3ugoA | 1 | 0.6056 | 100 | 0.57 | Contact Map | 0.822 |
| 1rp3A | 4 | 0.8028 | 100 | 0.578 | Contact Map | 0.745 |
| 1sigA | 1 | 0.4261 | 99.9 | 0.727 | Contact Map | 0.701 |
| 1or7A | 2 | 0.669 | 99.8 | 0.73 | Contact Map | 0.633 |
| 3vdoA | 1 | 0.6549 | 99.8 | 0.735 | Contact Map | 0.549 |
Sequence Conservation (Image Generated using WebLogo v3)