| UniProt: | P0AEM6 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11355 | ||
| Length: | 239 (228) | ||
| Sequences: | 3537 | ||
| Seq/Len: | 15.51 |
| FLIA
Paralog alert: 0.76 [within 20: 0.08] - ratio of genomes with paralogs Cluster includes: FLIA RPOH RPOS |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 107_L | 111_L | 3.97 | 1.00 | |
| 194_K | 198_T | 3.689 | 1.00 | |
| 110_E | 123_R | 3.613 | 1.00 | |
| 113_R | 119_E | 3.536 | 1.00 | |
| 118_T | 128_I | 3.344 | 1.00 | |
| 24_V | 48_G | 3.321 | 1.00 | |
| 13_K | 57_E | 3.046 | 1.00 | |
| 216_V | 221_V | 2.962 | 1.00 | |
| 14_H | 18_Q | 2.757 | 1.00 | |
| 106_Q | 123_R | 2.629 | 1.00 | |
| 103_A | 123_R | 2.567 | 1.00 | |
| 220_R | 223_Q | 2.537 | 1.00 | |
| 195_L | 213_V | 2.496 | 1.00 | |
| 199_L | 213_V | 2.299 | 1.00 | |
| 200_Y | 225_H | 2.122 | 1.00 | |
| 193_E | 231_R | 2.116 | 1.00 | |
| 214_L | 221_V | 2.084 | 1.00 | |
| 188_T | 235_K | 2.056 | 1.00 | |
| 23_L | 68_T | 2.018 | 1.00 | |
| 199_L | 205_L | 2.013 | 1.00 | |
| 187_E | 194_K | 1.962 | 1.00 | |
| 196_V | 228_A | 1.914 | 1.00 | |
| 106_Q | 110_E | 1.893 | 1.00 | |
| 120_V | 131_Y | 1.892 | 1.00 | |
| 60_D | 63_Q | 1.879 | 1.00 | |
| 15_S | 19_R | 1.815 | 1.00 | |
| 100_V | 134_M | 1.802 | 1.00 | |
| 208_K | 212_A | 1.782 | 1.00 | |
| 21_V | 49_G | 1.764 | 1.00 | |
| 170_L | 174_L | 1.761 | 1.00 | |
| 196_V | 224_L | 1.727 | 1.00 | |
| 17_W | 53_L | 1.718 | 1.00 | |
| 190_P | 231_R | 1.715 | 1.00 | |
| 127_D | 130_D | 1.71 | 1.00 | |
| 219_S | 222_S | 1.681 | 1.00 | |
| 117_E | 135_L | 1.668 | 1.00 | |
| 103_A | 106_Q | 1.662 | 1.00 | |
| 118_T | 122_E | 1.637 | 1.00 | |
| 107_L | 115_A | 1.617 | 1.00 | |
| 195_L | 199_L | 1.6 | 1.00 | |
| 195_L | 214_L | 1.595 | 1.00 | |
| 107_L | 113_R | 1.548 | 1.00 | |
| 100_V | 120_V | 1.528 | 1.00 | |
| 117_E | 132_R | 1.527 | 1.00 | |
| 117_E | 131_Y | 1.516 | 1.00 | |
| 56_V | 67_F | 1.497 | 1.00 | |
| 116_T | 119_E | 1.472 | 1.00 | |
| 121_A | 128_I | 1.47 | 1.00 | |
| 58_R | 70_Y | 1.462 | 1.00 | |
| 28_A | 45_L | 1.449 | 1.00 | |
| 27_E | 72_V | 1.425 | 1.00 | |
| 205_L | 213_V | 1.406 | 0.99 | |
| 28_A | 79_M | 1.4 | 0.99 | |
| 117_E | 128_I | 1.4 | 0.99 | |
| 191_E | 194_K | 1.385 | 0.99 | |
| 111_L | 115_A | 1.349 | 0.99 | |
| 207_L | 211_G | 1.342 | 0.99 | |
| 103_A | 124_L | 1.339 | 0.99 | |
| 103_A | 107_L | 1.315 | 0.99 | |
| 219_S | 223_Q | 1.3 | 0.99 | |
| 95_R | 99_E | 1.299 | 0.99 | |
| 34_R | 38_S | 1.289 | 0.99 | |
| 67_F | 71_A | 1.285 | 0.99 | |
| 27_E | 79_M | 1.284 | 0.99 | |
| 47_A | 82_E | 1.28 | 0.99 | |
| 100_V | 124_L | 1.261 | 0.99 | |
| 66_A | 69_T | 1.261 | 0.99 | |
| 104_I | 135_L | 1.249 | 0.99 | |
| 128_I | 132_R | 1.246 | 0.98 | |
| 126_I | 134_M | 1.234 | 0.98 | |
| 33_V | 38_S | 1.229 | 0.98 | |
| 29_L | 41_L | 1.213 | 0.98 | |
| 191_E | 195_L | 1.212 | 0.98 | |
| 55_A | 71_A | 1.21 | 0.98 | |
| 45_L | 49_G | 1.208 | 0.98 | |
| 96_N | 126_I | 1.207 | 0.98 | |
| 28_A | 41_L | 1.204 | 0.98 | |
| 197_L | 232_L | 1.195 | 0.98 | |
| 89_V | 97_A | 1.17 | 0.97 | |
| 51_G | 55_A | 1.169 | 0.97 | |
| 107_L | 123_R | 1.16 | 0.97 | |
| 23_L | 69_T | 1.16 | 0.97 | |
| 200_Y | 210_I | 1.132 | 0.97 | |
| 103_A | 120_V | 1.126 | 0.97 | |
| 220_R | 224_L | 1.126 | 0.97 | |
| 207_L | 222_S | 1.103 | 0.96 | |
| 121_A | 131_Y | 1.094 | 0.96 | |
| 25_R | 45_L | 1.093 | 0.96 | |
| 207_L | 219_S | 1.08 | 0.95 | |
| 20_Y | 68_T | 1.079 | 0.95 | |
| 121_A | 124_L | 1.076 | 0.95 | |
| 16_L | 56_V | 1.069 | 0.95 | |
| 208_K | 218_E | 1.055 | 0.95 | |
| 207_L | 218_E | 1.052 | 0.95 | |
| 121_A | 126_I | 1.047 | 0.94 | |
| 205_L | 209_E | 1.022 | 0.93 | |
| 96_N | 134_M | 1.018 | 0.93 | |
| 76_R | 80_L | 1.014 | 0.93 | |
| 179_R | 183_M | 1.012 | 0.93 | |
| 102_Q | 106_Q | 1.007 | 0.93 | |
| 77_G | 84_R | 1.001 | 0.92 | |
| 48_G | 79_M | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2a6hF | 2 | 0.9791 | 100 | 0.283 | Contact Map | 0.541 |
| 1l9zH | 1 | 0.9791 | 100 | 0.284 | Contact Map | 0.061 |
| 4kn7X | 2 | 0.9791 | 100 | 0.342 | Contact Map | 0.624 |
| 4ljzF | 2 | 0.9791 | 100 | 0.345 | Contact Map | 0.634 |
| 1rp3A | 4 | 0.9791 | 100 | 0.45 | Contact Map | 0.747 |
| 1l0oC | 1 | 0.9247 | 100 | 0.495 | Contact Map | 0.745 |
| 3ugoA | 1 | 0.59 | 99.9 | 0.608 | Contact Map | 0.841 |
| 3mzyA | 1 | 0.6611 | 99.8 | 0.683 | Contact Map | 0.639 |
| 3vdoA | 1 | 0.728 | 99.8 | 0.686 | Contact Map | 0.641 |
| 1or7A | 2 | 0.749 | 99.8 | 0.687 | Contact Map | 0.654 |
Sequence Conservation (Image Generated using WebLogo v3)