| UniProt: | P0AFR4 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12967 | ||
| Length: | 206 (201) | ||
| Sequences: | 3571 | ||
| Seq/Len: | 17.77 |
| YCIO
Paralog alert: 0.53 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: RIMN YCIO |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 23_I | 28_G | 5.217 | 1.00 | |
| 32_Y | 41_G | 3.551 | 1.00 | |
| 43_K | 46_D | 3.444 | 1.00 | |
| 28_G | 169_D | 3.322 | 1.00 | |
| 76_S | 86_F | 2.803 | 1.00 | |
| 47_K | 108_P | 2.589 | 1.00 | |
| 22_E | 26_K | 2.557 | 1.00 | |
| 18_N | 135_A | 2.434 | 1.00 | |
| 27_G | 46_D | 2.264 | 1.00 | |
| 70_R | 74_E | 2.11 | 1.00 | |
| 32_Y | 129_A | 2.052 | 1.00 | |
| 43_K | 138_E | 2.047 | 1.00 | |
| 52_R | 55_R | 1.978 | 1.00 | |
| 69_C | 75_L | 1.933 | 1.00 | |
| 63_H | 148_P | 1.906 | 1.00 | |
| 41_G | 142_S | 1.894 | 1.00 | |
| 150_S | 163_R | 1.887 | 1.00 | |
| 47_K | 110_R | 1.865 | 1.00 | |
| 71_D | 134_E | 1.852 | 1.00 | |
| 29_V | 56_I | 1.73 | 1.00 | |
| 44_I | 67_L | 1.714 | 1.00 | |
| 24_V | 136_L | 1.708 | 1.00 | |
| 31_V | 168_V | 1.693 | 1.00 | |
| 70_R | 133_L | 1.661 | 1.00 | |
| 35_D | 126_N | 1.651 | 1.00 | |
| 157_P | 173_H | 1.645 | 1.00 | |
| 19_Q | 22_E | 1.637 | 1.00 | |
| 156_D | 159_E | 1.625 | 1.00 | |
| 147_L | 163_R | 1.622 | 1.00 | |
| 45_E | 138_E | 1.6 | 1.00 | |
| 86_F | 90_K | 1.589 | 1.00 | |
| 161_K | 165_E | 1.579 | 1.00 | |
| 51_E | 55_R | 1.576 | 1.00 | |
| 17_I | 135_A | 1.563 | 1.00 | |
| 23_I | 170_L | 1.557 | 1.00 | |
| 201_D | 204_P | 1.549 | 1.00 | |
| 131_A | 134_E | 1.54 | 1.00 | |
| 42_C | 49_A | 1.51 | 1.00 | |
| 31_V | 160_I | 1.494 | 1.00 | |
| 38_Y | 157_P | 1.458 | 1.00 | |
| 79_S | 101_L | 1.438 | 1.00 | |
| 79_S | 119_I | 1.423 | 1.00 | |
| 128_I | 174_G | 1.421 | 1.00 | |
| 41_G | 140_M | 1.416 | 1.00 | |
| 118_T | 186_D | 1.408 | 1.00 | |
| 28_G | 52_R | 1.387 | 0.99 | |
| 78_Y | 121_M | 1.383 | 0.99 | |
| 21_V | 135_A | 1.381 | 0.99 | |
| 47_K | 51_E | 1.377 | 0.99 | |
| 74_E | 77_T | 1.37 | 0.99 | |
| 82_D | 85_A | 1.358 | 0.99 | |
| 73_S | 76_S | 1.353 | 0.99 | |
| 128_I | 172_I | 1.344 | 0.99 | |
| 72_L | 90_K | 1.341 | 0.99 | |
| 46_D | 49_A | 1.298 | 0.99 | |
| 186_D | 189_D | 1.276 | 0.99 | |
| 68_M | 142_S | 1.268 | 0.99 | |
| 75_L | 121_M | 1.255 | 0.99 | |
| 56_I | 167_Q | 1.253 | 0.99 | |
| 23_I | 169_D | 1.246 | 0.98 | |
| 160_I | 171_I | 1.245 | 0.98 | |
| 21_V | 25_R | 1.241 | 0.98 | |
| 20_A | 132_L | 1.24 | 0.98 | |
| 80_F | 102_K | 1.231 | 0.98 | |
| 178_G | 199_V | 1.229 | 0.98 | |
| 89_M | 99_F | 1.223 | 0.98 | |
| 56_I | 164_L | 1.217 | 0.98 | |
| 161_K | 171_I | 1.211 | 0.98 | |
| 53_I | 141_L | 1.211 | 0.98 | |
| 194_V | 202_V | 1.209 | 0.98 | |
| 69_C | 78_Y | 1.204 | 0.98 | |
| 54_C | 61_D | 1.203 | 0.98 | |
| 52_R | 56_I | 1.196 | 0.98 | |
| 21_V | 136_L | 1.193 | 0.98 | |
| 32_Y | 132_L | 1.189 | 0.98 | |
| 70_R | 134_E | 1.186 | 0.98 | |
| 72_L | 123_V | 1.172 | 0.98 | |
| 83_N | 86_F | 1.168 | 0.97 | |
| 187_L | 192_P | 1.152 | 0.97 | |
| 145_L | 160_I | 1.136 | 0.97 | |
| 79_S | 121_M | 1.131 | 0.97 | |
| 127_P | 131_A | 1.131 | 0.97 | |
| 71_D | 74_E | 1.116 | 0.96 | |
| 22_E | 25_R | 1.113 | 0.96 | |
| 98_T | 120_G | 1.113 | 0.96 | |
| 147_L | 167_Q | 1.112 | 0.96 | |
| 31_V | 157_P | 1.11 | 0.96 | |
| 103_G | 113_Q | 1.108 | 0.96 | |
| 186_D | 192_P | 1.107 | 0.96 | |
| 32_Y | 142_S | 1.103 | 0.96 | |
| 66_T | 120_G | 1.089 | 0.96 | |
| 81_V | 89_M | 1.076 | 0.95 | |
| 51_E | 110_R | 1.075 | 0.95 | |
| 20_A | 30_I | 1.07 | 0.95 | |
| 123_V | 130_Q | 1.068 | 0.95 | |
| 132_L | 172_I | 1.05 | 0.94 | |
| 158_E | 162_D | 1.049 | 0.94 | |
| 59_L | 146_M | 1.047 | 0.94 | |
| 100_I | 195_V | 1.033 | 0.94 | |
| 102_K | 117_K | 1.029 | 0.94 | |
| 69_C | 123_V | 1.027 | 0.94 | |
| 24_V | 140_M | 1.026 | 0.94 | |
| 9_P | 12_P | 1.019 | 0.93 | |
| 159_E | 163_R | 1.016 | 0.93 | |
| 154_E | 160_I | 1.006 | 0.93 | |
| 75_L | 81_V | 1.002 | 0.92 | |
| 31_V | 40_L | 1.002 | 0.92 | |
| 136_L | 139_P | 1.001 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2eqaA | 1 | 0.9903 | 100 | 0.039 | Contact Map | 0.867 |
| 1k7jA | 1 | 1 | 100 | 0.1 | Contact Map | 0.757 |
| 1jcuA | 1 | 0.9709 | 100 | 0.112 | Contact Map | 0.366 |
| 3l7vA | 1 | 0.9709 | 100 | 0.139 | Contact Map | 0.529 |
| 3vthA | 2 | 0.9757 | 100 | 0.172 | Contact Map | 0.753 |
| 1hruA | 2 | 0.8932 | 100 | 0.184 | Contact Map | 0.759 |
| 4g9iA | 6 | 0.9757 | 100 | 0.199 | Contact Map | 0.744 |
| 3ttcA | 1 | 0.9369 | 100 | 0.242 | Contact Map | 0.682 |
| 3venA | 1 | 0.8301 | 96 | 0.886 | Contact Map | 0.63 |
| 1x9aA | 2 | 0.4223 | 19.8 | 0.948 | Contact Map | 0.076 |
Sequence Conservation (Image Generated using WebLogo v3)