| UniProt: | P0AFI5 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12015 | ||
| Length: | 310 (250) | ||
| Sequences: | 1731 | ||
| Seq/Len: | 6.92 |
| PBP7
Paralog alert: 0.53 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: DACA DACC DACD PBP7 |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 60_D | 176_R | 3.845 | 1.00 | |
| 113_R | 132_L | 3.699 | 1.00 | |
| 79_D | 150_K | 3.183 | 1.00 | |
| 56_S | 59_P | 3.038 | 1.00 | |
| 119_L | 125_E | 2.907 | 1.00 | |
| 137_P | 146_A | 2.605 | 1.00 | |
| 77_V | 132_L | 2.525 | 1.00 | |
| 150_K | 153_S | 2.501 | 1.00 | |
| 87_K | 110_E | 2.496 | 1.00 | |
| 120_A | 129_A | 2.462 | 1.00 | |
| 43_A | 55_Y | 2.429 | 1.00 | |
| 156_M | 181_L | 2.406 | 1.00 | |
| 47_D | 251_K | 2.386 | 1.00 | |
| 42_S | 175_A | 2.378 | 1.00 | |
| 91_D | 134_H | 2.32 | 1.00 | |
| 112_S | 115_D | 2.309 | 1.00 | |
| 60_D | 158_N | 2.283 | 1.00 | |
| 182_L | 230_T | 2.277 | 1.00 | |
| 72_M | 159_T | 2.258 | 1.00 | |
| 75_M | 184_A | 2.215 | 1.00 | |
| 85_D | 114_K | 2.136 | 1.00 | |
| 86_E | 135_H | 2.048 | 1.00 | |
| 62_V | 172_V | 2.022 | 1.00 | |
| 74_A | 121_L | 2.017 | 1.00 | |
| 42_S | 63_R | 1.985 | 1.00 | |
| 160_R | 172_V | 1.972 | 1.00 | |
| 45_I | 253_V | 1.968 | 1.00 | |
| 71_L | 243_V | 1.968 | 1.00 | |
| 154_L | 184_A | 1.964 | 1.00 | |
| 68_I | 178_L | 1.962 | 1.00 | |
| 228_Q | 252_P | 1.901 | 1.00 | |
| 228_Q | 245_R | 1.898 | 1.00 | |
| 120_A | 132_L | 1.895 | 1.00 | |
| 48_L | 254_A | 1.891 | 1.00 | |
| 68_I | 243_V | 1.884 | 1.00 | |
| 140_Y | 164_P | 1.836 | 1.00 | |
| 137_P | 142_A | 1.797 | 1.00 | |
| 184_A | 187_Q | 1.783 | 1.00 | |
| 77_V | 113_R | 1.751 | 1.00 | |
| 68_I | 258_M | 1.742 | 1.00 | |
| 58_H | 61_L | 1.732 | 1.00 | |
| 176_R | 180_K | 1.717 | 1.00 | |
| 72_M | 151_A | 1.682 | 1.00 | |
| 255_L | 270_A | 1.669 | 1.00 | |
| 235_T | 238_A | 1.658 | 1.00 | |
| 118_L | 122_M | 1.636 | 1.00 | |
| 90_V | 131_S | 1.614 | 1.00 | |
| 175_A | 258_M | 1.605 | 1.00 | |
| 65_I | 173_S | 1.591 | 1.00 | |
| 88_L | 131_S | 1.588 | 1.00 | |
| 84_L | 117_L | 1.557 | 1.00 | |
| 62_V | 158_N | 1.555 | 1.00 | |
| 159_T | 173_S | 1.55 | 0.99 | |
| 238_A | 241_C | 1.52 | 0.99 | |
| 226_N | 248_I | 1.499 | 0.99 | |
| 87_K | 112_S | 1.472 | 0.99 | |
| 247_V | 250_N | 1.466 | 0.99 | |
| 118_L | 197_T | 1.463 | 0.99 | |
| 89_K | 110_E | 1.455 | 0.99 | |
| 139_G | 142_A | 1.454 | 0.99 | |
| 73_T | 129_A | 1.447 | 0.99 | |
| 244_M | 270_A | 1.442 | 0.99 | |
| 182_L | 243_V | 1.413 | 0.99 | |
| 142_A | 145_K | 1.403 | 0.99 | |
| 46_V | 179_T | 1.397 | 0.99 | |
| 41_G | 259_D | 1.374 | 0.98 | |
| 83_P | 86_E | 1.373 | 0.98 | |
| 44_M | 59_P | 1.37 | 0.98 | |
| 190_L | 193_Q | 1.365 | 0.98 | |
| 43_A | 57_N | 1.36 | 0.98 | |
| 178_L | 243_V | 1.335 | 0.98 | |
| 94_Q | 134_H | 1.335 | 0.98 | |
| 247_V | 252_P | 1.33 | 0.98 | |
| 75_M | 150_K | 1.328 | 0.98 | |
| 74_A | 120_A | 1.313 | 0.98 | |
| 114_K | 118_L | 1.301 | 0.98 | |
| 72_M | 76_V | 1.286 | 0.97 | |
| 75_M | 188_Y | 1.27 | 0.97 | |
| 180_K | 183_I | 1.256 | 0.97 | |
| 179_T | 254_A | 1.246 | 0.97 | |
| 119_L | 128_A | 1.236 | 0.97 | |
| 84_L | 114_K | 1.202 | 0.96 | |
| 148_N | 161_F | 1.201 | 0.96 | |
| 88_L | 135_H | 1.199 | 0.96 | |
| 64_P | 168_S | 1.197 | 0.96 | |
| 158_N | 174_T | 1.176 | 0.95 | |
| 140_Y | 144_I | 1.15 | 0.94 | |
| 136_Y | 146_A | 1.146 | 0.94 | |
| 245_R | 252_P | 1.142 | 0.94 | |
| 42_S | 58_H | 1.136 | 0.94 | |
| 257_V | 270_A | 1.129 | 0.93 | |
| 91_D | 95_T | 1.126 | 0.93 | |
| 124_S | 231_K | 1.12 | 0.93 | |
| 151_A | 156_M | 1.114 | 0.93 | |
| 168_S | 237_A | 1.109 | 0.93 | |
| 223_D | 275_T | 1.104 | 0.92 | |
| 195_S | 230_T | 1.097 | 0.92 | |
| 192_G | 252_P | 1.095 | 0.92 | |
| 74_A | 117_L | 1.089 | 0.92 | |
| 62_V | 174_T | 1.082 | 0.91 | |
| 76_V | 147_M | 1.077 | 0.91 | |
| 269_D | 272_R | 1.077 | 0.91 | |
| 72_M | 161_F | 1.064 | 0.90 | |
| 114_K | 194_L | 1.059 | 0.90 | |
| 116_M | 128_A | 1.058 | 0.90 | |
| 49_N | 252_P | 1.057 | 0.90 | |
| 163_E | 168_S | 1.054 | 0.90 | |
| 145_K | 149_A | 1.051 | 0.90 | |
| 142_A | 146_A | 1.049 | 0.90 | |
| 192_G | 195_S | 1.044 | 0.89 | |
| 151_A | 181_L | 1.036 | 0.89 | |
| 125_E | 128_A | 1.034 | 0.89 | |
| 76_V | 79_D | 1.034 | 0.89 | |
| 71_L | 185_S | 1.033 | 0.89 | |
| 246_T | 274_R | 1.027 | 0.88 | |
| 44_M | 179_T | 1.024 | 0.88 | |
| 253_V | 277_I | 1.024 | 0.88 | |
| 111_I | 116_M | 1.01 | 0.87 | |
| 144_I | 147_M | 1.001 | 0.86 | |
| 45_I | 255_L | 1 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3mfdA | 2 | 0.8645 | 100 | 0.373 | Contact Map | 0.845 |
| 3itaA | 4 | 0.8935 | 100 | 0.387 | Contact Map | 0.853 |
| 3mzfA | 1 | 0.9065 | 100 | 0.39 | Contact Map | 0.846 |
| 4k91A | 2 | 0.8742 | 100 | 0.392 | Contact Map | 0.856 |
| 1xp4A | 4 | 0.8935 | 100 | 0.397 | Contact Map | 0.903 |
| 3a3jA | 1 | 0.8806 | 100 | 0.397 | Contact Map | 0.857 |
| 3hunA | 2 | 0.971 | 100 | 0.407 | Contact Map | 0.877 |
| 1tvfA | 2 | 0.9258 | 100 | 0.424 | Contact Map | 0.879 |
| 2bcfA | 1 | 0.871 | 100 | 0.453 | Contact Map | 0.836 |
| 1es5A | 1 | 0.7968 | 100 | 0.456 | Contact Map | 0.842 |
Sequence Conservation (Image Generated using WebLogo v3)