May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LPTF - Lipopolysaccharide export system permease protein LptF
UniProt: P0AF98 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12535
Length: 366 (347)
Sequences: 2114
Seq/Len: 6.09

LPTF
Paralog alert: 0.89 [within 20: 0.44] - ratio of genomes with paralogs
Cluster includes: LPTF LPTG
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
191_D 209_Q 5.889 1.00
210_G 227_F 4.759 1.00
162_E 171_D 4.053 1.00
4_I 97_V 3.075 1.00
192_S 208_N 2.988 1.00
267_N 332_W 2.79 1.00
78_K 82_E 2.579 1.00
3_I 88_M 2.561 1.00
163_S 170_K 2.505 1.00
168_D 192_S 2.482 1.00
76_L 102_A 2.404 1.00
265_E 269_R 2.224 1.00
176_Q 186_S 2.047 1.00
71_G 75_T 2.04 1.00
15_Q 71_G 1.985 1.00
106_A 280_A 1.881 1.00
127_H 130_E 1.837 1.00
268_W 317_K 1.822 1.00
194_H 208_N 1.821 1.00
168_D 194_H 1.82 1.00
190_A 207_L 1.786 1.00
211_T 226_D 1.77 1.00
88_M 93_L 1.77 1.00
196_T 206_T 1.761 1.00
255_W 266_L 1.731 1.00
79_L 88_M 1.728 1.00
22_L 63_I 1.711 1.00
274_F 332_W 1.707 1.00
123_W 127_H 1.699 1.00
336_L 340_A 1.68 1.00
9_R 13_K 1.637 1.00
5_R 9_R 1.619 1.00
271_T 332_W 1.618 1.00
111_I 115_V 1.577 0.99
340_A 344_V 1.577 0.99
208_N 229_D 1.576 0.99
57_P 65_P 1.567 0.99
204_V 231_Q 1.567 0.99
54_L 124_S 1.562 0.99
214_E 225_T 1.547 0.99
19_L 67_S 1.545 0.99
68_L 276_V 1.538 0.99
275_T 309_F 1.536 0.99
188_V 212_R 1.531 0.99
326_D 329_L 1.531 0.99
186_S 214_E 1.511 0.99
10_E 78_K 1.504 0.99
38_A 48_V 1.503 0.99
186_S 212_R 1.502 0.99
278_M 338_Y 1.492 0.99
193_G 207_L 1.477 0.99
116_N 120_A 1.46 0.99
53_G 57_P 1.442 0.99
174_L 207_L 1.429 0.99
110_A 277_F 1.425 0.99
320_G 330_W 1.421 0.98
107_V 111_I 1.418 0.98
342_A 346_N 1.407 0.98
206_T 229_D 1.401 0.98
195_L 238_A 1.397 0.98
250_D 253_T 1.38 0.98
264_A 269_R 1.354 0.98
282_M 342_A 1.35 0.98
339_L 343_I 1.345 0.98
2_I 5_R 1.323 0.97
83_S 290_N 1.323 0.97
146_Q 163_S 1.322 0.97
157_S 176_Q 1.307 0.97
170_K 192_S 1.304 0.97
34_I 52_L 1.299 0.97
50_S 54_L 1.298 0.97
49_L 53_G 1.294 0.97
19_L 60_A 1.293 0.97
190_A 193_G 1.292 0.97
67_S 71_G 1.275 0.96
15_Q 67_S 1.262 0.96
51_L 132_L 1.255 0.96
3_I 6_Y 1.254 0.96
23_L 56_V 1.253 0.96
44_P 47_L 1.25 0.96
26_F 59_M 1.241 0.96
181_G 184_R 1.238 0.96
19_L 23_L 1.237 0.96
206_T 231_Q 1.225 0.95
110_A 273_V 1.222 0.95
90_A 244_N 1.206 0.95
14_S 75_T 1.202 0.95
104_I 108_F 1.201 0.95
148_Q 326_D 1.2 0.94
6_Y 88_M 1.191 0.94
336_L 339_L 1.185 0.94
99_V 284_V 1.184 0.94
130_E 134_E 1.178 0.94
7_L 88_M 1.175 0.94
264_A 321_G 1.173 0.94
115_V 120_A 1.172 0.94
18_I 70_L 1.171 0.94
69_F 279_M 1.167 0.93
320_G 331_M 1.152 0.93
176_Q 180_K 1.149 0.93
339_L 342_A 1.148 0.93
165_D 168_D 1.145 0.92
173_F 177_I 1.142 0.92
317_K 321_G 1.14 0.92
172_V 207_L 1.136 0.92
214_E 223_R 1.132 0.92
301_P 305_L 1.131 0.92
209_Q 228_Q 1.123 0.92
8_V 105_L 1.117 0.91
279_M 313_Q 1.114 0.91
6_Y 65_P 1.111 0.91
249_M 253_T 1.107 0.91
184_R 240_A 1.106 0.91
76_L 284_V 1.102 0.90
72_L 280_A 1.101 0.90
27_F 52_L 1.098 0.90
165_D 170_K 1.096 0.90
2_I 6_Y 1.093 0.90
278_M 335_N 1.091 0.90
77_G 285_P 1.09 0.90
50_S 127_H 1.088 0.90
4_I 15_Q 1.087 0.90
15_Q 109_T 1.084 0.90
172_V 193_G 1.082 0.89
74_M 298_S 1.08 0.89
26_F 63_I 1.074 0.89
43_I 48_V 1.072 0.89
180_K 184_R 1.057 0.88
4_I 7_L 1.056 0.88
64_L 113_A 1.054 0.88
4_I 283_V 1.052 0.88
65_P 90_A 1.051 0.88
11_T 75_T 1.048 0.87
277_F 285_P 1.043 0.87
212_R 225_T 1.042 0.87
114_A 118_M 1.041 0.87
61_Q 117_V 1.039 0.87
11_T 105_L 1.038 0.87
26_F 285_P 1.028 0.86
97_V 100_K 1.028 0.86
144_L 161_I 1.027 0.86
343_I 347_L 1.025 0.86
47_L 50_S 1.025 0.86
51_L 225_T 1.022 0.85
86_T 285_P 1.011 0.85
212_R 227_F 1.008 0.84
191_D 208_N 1.008 0.84
45_A 49_L 1.006 0.84
149_F 227_F 1.004 0.84
51_L 55_G 1.003 0.84
121_G 124_S 1 0.84
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4hfiA50.311550.971Contact Map0.168
2kluA10.12843.60.973Contact Map0.211
3j1rA210.0713.20.973Contact Map0.652
2l6wA20.10112.50.975Contact Map0.55
2m7gA10.16672.50.975Contact Map0.469
3arcJ20.10662.40.975Contact Map0.383
2xq2A10.29232.30.975Contact Map0.341
2rddB10.09842.30.975Contact Map0.328
1oefA10.05191.80.977Contact Map
4cadC40.21581.60.977Contact Map0.648

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.228 seconds.