| UniProt: | P0AF50 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11936 | ||
| Length: | 118 (116) | ||
| Sequences: | 854 | ||
| Seq/Len: | 7.36 |
| YJBR
Paralog alert: 0.41 [within 20: 0.00] - ratio of genomes with paralogs Cluster includes: YBDF YJBR |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 49_S | 73_L | 3.953 | 1.00 | |
| 16_A | 36_F | 3.743 | 1.00 | |
| 13_K | 97_D | 3.246 | 1.00 | |
| 9_Y | 97_D | 2.58 | 1.00 | |
| 70_S | 80_T | 2.303 | 1.00 | |
| 67_V | 95_L | 2.198 | 1.00 | |
| 2_T | 5_E | 2.137 | 1.00 | |
| 52_T | 57_A | 2.103 | 1.00 | |
| 7_L | 18_Q | 2.071 | 1.00 | |
| 19_S | 30_K | 1.925 | 1.00 | |
| 61_R | 79_S | 1.872 | 1.00 | |
| 108_P | 114_L | 1.668 | 1.00 | |
| 29_I | 103_A | 1.663 | 1.00 | |
| 108_P | 111_K | 1.599 | 1.00 | |
| 56_L | 98_A | 1.574 | 1.00 | |
| 52_T | 79_S | 1.572 | 1.00 | |
| 37_A | 50_L | 1.527 | 0.99 | |
| 37_A | 48_V | 1.45 | 0.99 | |
| 10_C | 37_A | 1.386 | 0.99 | |
| 32_E | 104_V | 1.385 | 0.99 | |
| 24_W | 28_Q | 1.368 | 0.99 | |
| 77_H | 102_Q | 1.325 | 0.98 | |
| 54_P | 77_H | 1.306 | 0.98 | |
| 91_Q | 95_L | 1.294 | 0.98 | |
| 9_Y | 93_Y | 1.283 | 0.98 | |
| 58_E | 76_A | 1.281 | 0.98 | |
| 49_S | 80_T | 1.27 | 0.97 | |
| 74_N | 77_H | 1.265 | 0.97 | |
| 104_V | 115_L | 1.253 | 0.97 | |
| 111_K | 114_L | 1.248 | 0.97 | |
| 6_L | 48_V | 1.243 | 0.97 | |
| 99_S | 102_Q | 1.238 | 0.97 | |
| 98_A | 101_Q | 1.23 | 0.97 | |
| 104_V | 112_R | 1.219 | 0.97 | |
| 66_D | 87_L | 1.211 | 0.96 | |
| 21_H | 30_K | 1.194 | 0.96 | |
| 9_Y | 13_K | 1.186 | 0.96 | |
| 22_N | 38_M | 1.178 | 0.96 | |
| 51_K | 103_A | 1.157 | 0.95 | |
| 68_R | 82_Y | 1.137 | 0.94 | |
| 79_S | 95_L | 1.135 | 0.94 | |
| 7_L | 29_I | 1.125 | 0.94 | |
| 5_E | 93_Y | 1.123 | 0.94 | |
| 18_Q | 27_T | 1.096 | 0.93 | |
| 47_A | 80_T | 1.068 | 0.92 | |
| 71_R | 74_N | 1.061 | 0.91 | |
| 31_V | 104_V | 1.044 | 0.90 | |
| 35_L | 38_M | 1.034 | 0.90 | |
| 35_L | 73_L | 1.026 | 0.89 | |
| 63_Q | 91_Q | 1.023 | 0.89 | |
| 21_H | 72_H | 1.021 | 0.89 | |
| 66_D | 85_G | 1.02 | 0.89 | |
| 75_K | 99_S | 1.016 | 0.89 | |
| 23_D | 26_A | 1.005 | 0.88 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2fkiA | 1 | 1 | 100 | 0.12 | Contact Map | 0.479 |
| 2a1vA | 1 | 1 | 100 | 0.142 | Contact Map | 0.659 |
| 2kfpA | 1 | 0.9407 | 100 | 0.199 | Contact Map | 0.413 |
| 2od0A | 2 | 0.8051 | 98.6 | 0.737 | Contact Map | 0.614 |
| 2i8dA | 2 | 0.8644 | 83.4 | 0.881 | Contact Map | 0.491 |
| 2kl4A | 1 | 0.8051 | 78.4 | 0.887 | Contact Map | 0.383 |
| 2oc6A | 2 | 0.8729 | 77.8 | 0.888 | Contact Map | 0.5 |
| 1f0jA | 2 | 0.9661 | 21.9 | 0.923 | Contact Map | 0.211 |
| 4i15A | 2 | 0.9661 | 20 | 0.924 | Contact Map | 0.158 |
| 3ituA | 4 | 0.9661 | 19.4 | 0.925 | Contact Map | 0.202 |
Sequence Conservation (Image Generated using WebLogo v3)