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OPENSEQ.org
YQJA - Inner membrane protein YqjA
UniProt: P0AA63 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12740
Length: 220 (215)
Sequences: 1759
Seq/Len: 8.18
YQJA
Paralog alert: 0.48 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: DEDA YABI YGHB YOHD YQJA
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
67_G 70_Q 2.989 1.00
121_H 124_S 2.974 1.00
84_W 150_N 2.575 1.00
115_H 119_H 2.315 1.00
127_L 159_M 2.315 1.00
75_L 165_V 2.258 1.00
107_P 110_Y 2.236 1.00
95_N 115_H 2.225 1.00
37_F 85_V 2.192 1.00
76_T 162_L 1.985 1.00
54_L 169_T 1.962 1.00
33_F 77_V 1.939 1.00
61_I 173_Y 1.853 1.00
72_I 166_L 1.847 1.00
37_F 81_L 1.77 1.00
57_V 71_T 1.769 1.00
80_S 158_W 1.682 1.00
208_L 212_W 1.654 1.00
74_L 78_A 1.636 1.00
149_N 152_R 1.616 1.00
83_C 150_N 1.603 1.00
109_H 113_R 1.596 1.00
1_M 4_L 1.552 1.00
112_Q 116_H 1.526 1.00
54_L 58_G 1.51 1.00
154_Q 158_W 1.505 1.00
192_L 196_P 1.491 1.00
68_Y 72_I 1.478 0.99
91_R 147_G 1.448 0.99
129_G 139_L 1.441 0.99
132_I 135_V 1.437 0.99
108_A 112_Q 1.426 0.99
86_S 137_T 1.422 0.99
114_A 125_A 1.413 0.99
84_W 154_Q 1.412 0.99
190_S 194_L 1.412 0.99
71_T 169_T 1.4 0.99
79_A 161_G 1.398 0.99
36_L 78_A 1.398 0.99
123_L 152_R 1.396 0.99
69_P 170_T 1.395 0.99
68_Y 169_T 1.393 0.99
157_N 161_G 1.382 0.99
62_A 177_K 1.367 0.99
81_L 85_V 1.359 0.99
68_Y 170_T 1.357 0.99
114_A 146_S 1.334 0.99
46_A 86_S 1.307 0.98
72_I 169_T 1.306 0.98
212_W 216_Y 1.298 0.98
45_A 86_S 1.298 0.98
39_E 50_G 1.297 0.98
124_S 128_I 1.294 0.98
80_S 157_N 1.285 0.98
2_E 5_T 1.282 0.98
76_T 80_S 1.278 0.98
140_P 157_N 1.261 0.98
150_N 154_Q 1.259 0.98
73_L 77_V 1.257 0.98
70_Q 74_L 1.251 0.98
206_G 210_V 1.247 0.98
184_Y 187_Q 1.24 0.98
182_L 186_D 1.234 0.97
39_E 130_R 1.209 0.97
24_M 31_V 1.192 0.97
87_Y 144_G 1.189 0.97
118_F 143_A 1.184 0.97
72_I 170_T 1.181 0.96
211_L 215_K 1.168 0.96
206_G 209_V 1.167 0.96
54_L 75_L 1.161 0.96
18_T 23_S 1.155 0.96
38_L 45_A 1.144 0.96
9_Q 13_A 1.139 0.95
48_L 137_T 1.136 0.95
210_V 213_K 1.132 0.95
92_W 96_T 1.121 0.95
36_L 75_L 1.117 0.95
118_F 139_L 1.111 0.95
211_L 214_K 1.111 0.95
153_F 157_N 1.11 0.95
4_L 8_L 1.11 0.95
210_V 214_K 1.103 0.94
212_W 215_K 1.1 0.94
32_L 75_L 1.095 0.94
80_S 162_L 1.076 0.93
205_A 209_V 1.071 0.93
208_L 211_L 1.066 0.93
179_P 183_K 1.065 0.93
90_G 145_L 1.064 0.93
62_A 173_Y 1.063 0.93
207_S 213_K 1.059 0.93
166_L 170_T 1.055 0.92
36_L 165_V 1.053 0.92
70_Q 73_L 1.051 0.92
207_S 211_L 1.05 0.92
61_I 68_Y 1.044 0.92
69_P 72_I 1.039 0.92
116_H 155_F 1.036 0.91
56_L 185_E 1.032 0.91
36_L 54_L 1.029 0.91
48_L 52_S 1.024 0.91
48_L 53_L 1.022 0.91
125_A 148_L 1.021 0.91
40_N 83_C 1.019 0.91
93_L 98_T 1.019 0.91
209_V 213_K 1.017 0.90
187_Q 191_C 1.012 0.90
120_K 183_K 1.011 0.90
95_N 99_V 1.011 0.90
123_L 156_F 1.011 0.90
84_W 157_N 1.009 0.90
103_L 106_L 1.005 0.90
194_L 198_V 1.003 0.90
35_I 48_L 1.002 0.90
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2l2tA20.190914.30.949Contact Map0.487
2kluA10.190914.10.949Contact Map0.129
2m20A20.168212.10.95Contact Map0.585
2ks1B10.195510.30.952Contact Map0.369
2kv5A10.158.30.954Contact Map0.535
4b19A10.13648.30.954Contact Map0.547
2qksA20.54097.40.955Contact Map0.137
3spcA10.57736.20.956Contact Map0.152
2jwaA20.19555.70.957Contact Map0.308
2lbgA10.12274.90.959Contact Map0.076
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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