| UniProt: | P0A6D5 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11234 | ||
| Length: | 288 (281) | ||
| Sequences: | 2910 | ||
| Seq/Len: | 10.36 |
| YDIB
Paralog alert: 0.33 [within 20: 0.02] - ratio of genomes with paralogs Cluster includes: AROE YDIB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 238_M | 246_Q | 5.018 | 1.00 | |
| 15_Y | 43_E | 4.149 | 1.00 | |
| 91_I | 103_G | 3.529 | 1.00 | |
| 82_T | 104_Y | 3.439 | 1.00 | |
| 229_V | 241_L | 3.004 | 1.00 | |
| 268_T | 274_D | 2.919 | 1.00 | |
| 80_E | 100_Y | 2.881 | 1.00 | |
| 72_Q | 137_T | 2.663 | 1.00 | |
| 80_E | 102_R | 2.652 | 1.00 | |
| 25_M | 263_G | 2.587 | 1.00 | |
| 4_T | 36_P | 2.485 | 1.00 | |
| 265_E | 268_T | 2.471 | 1.00 | |
| 78_V | 103_G | 2.463 | 1.00 | |
| 109_T | 265_E | 2.443 | 1.00 | |
| 96_N | 101_L | 2.388 | 1.00 | |
| 74_A | 94_I | 2.374 | 1.00 | |
| 78_V | 94_I | 2.366 | 1.00 | |
| 128_V | 197_A | 2.364 | 1.00 | |
| 126_T | 150_E | 2.164 | 1.00 | |
| 14_A | 67_S | 2.162 | 1.00 | |
| 240_K | 244_Q | 2.159 | 1.00 | |
| 85_A | 91_I | 2.144 | 1.00 | |
| 238_M | 243_Q | 2.138 | 1.00 | |
| 165_L | 169_Q | 2.132 | 1.00 | |
| 129_L | 140_G | 2.123 | 1.00 | |
| 65_G | 266_Q | 2.098 | 1.00 | |
| 74_A | 78_V | 2.059 | 1.00 | |
| 73_L | 76_E | 2.05 | 1.00 | |
| 111_H | 230_T | 2.044 | 1.00 | |
| 75_C | 81_L | 1.998 | 1.00 | |
| 242_L | 252_T | 1.997 | 1.00 | |
| 64_T | 94_I | 1.971 | 1.00 | |
| 95_V | 269_L | 1.969 | 1.00 | |
| 139_I | 232_C | 1.948 | 1.00 | |
| 78_V | 91_I | 1.942 | 1.00 | |
| 15_Y | 46_N | 1.902 | 1.00 | |
| 16_P | 19_H | 1.822 | 1.00 | |
| 111_H | 139_I | 1.804 | 1.00 | |
| 10_I | 30_L | 1.798 | 1.00 | |
| 12_L | 17_I | 1.796 | 1.00 | |
| 229_V | 245_A | 1.795 | 1.00 | |
| 132_A | 155_N | 1.765 | 1.00 | |
| 13_M | 64_T | 1.747 | 1.00 | |
| 93_T | 106_T | 1.731 | 1.00 | |
| 114_A | 257_G | 1.69 | 1.00 | |
| 155_N | 205_K | 1.667 | 1.00 | |
| 15_Y | 70_N | 1.637 | 1.00 | |
| 81_L | 103_G | 1.619 | 1.00 | |
| 83_P | 86_K | 1.594 | 1.00 | |
| 114_A | 230_T | 1.578 | 1.00 | |
| 137_T | 170_R | 1.571 | 1.00 | |
| 82_T | 102_R | 1.566 | 1.00 | |
| 113_R | 261_W | 1.564 | 1.00 | |
| 55_G | 58_A | 1.56 | 1.00 | |
| 128_V | 154_F | 1.558 | 1.00 | |
| 267_F | 271_T | 1.558 | 1.00 | |
| 135_A | 232_C | 1.557 | 1.00 | |
| 88_V | 108_G | 1.556 | 1.00 | |
| 127_M | 148_L | 1.556 | 1.00 | |
| 70_N | 73_L | 1.555 | 1.00 | |
| 15_Y | 45_D | 1.526 | 1.00 | |
| 48_S | 51_G | 1.526 | 1.00 | |
| 30_L | 37_F | 1.518 | 1.00 | |
| 79_D | 100_Y | 1.516 | 1.00 | |
| 11_G | 42_F | 1.507 | 1.00 | |
| 94_I | 101_L | 1.493 | 1.00 | |
| 207_G | 233_V | 1.489 | 1.00 | |
| 111_H | 201_T | 1.478 | 1.00 | |
| 84_A | 104_Y | 1.477 | 1.00 | |
| 224_H | 227_L | 1.471 | 1.00 | |
| 113_R | 116_K | 1.46 | 1.00 | |
| 35_L | 271_T | 1.452 | 1.00 | |
| 81_L | 91_I | 1.423 | 1.00 | |
| 126_T | 198_D | 1.382 | 0.99 | |
| 275_F | 280_V | 1.37 | 0.99 | |
| 9_L | 40_M | 1.37 | 0.99 | |
| 44_V | 52_A | 1.366 | 0.99 | |
| 81_L | 86_K | 1.362 | 0.99 | |
| 8_E | 62_R | 1.358 | 0.99 | |
| 10_I | 37_F | 1.349 | 0.99 | |
| 243_Q | 247_Q | 1.34 | 0.99 | |
| 148_L | 151_I | 1.331 | 0.99 | |
| 104_Y | 269_L | 1.323 | 0.99 | |
| 126_T | 152_K | 1.301 | 0.99 | |
| 56_L | 64_T | 1.278 | 0.99 | |
| 72_Q | 163_K | 1.278 | 0.99 | |
| 49_F | 74_A | 1.274 | 0.99 | |
| 28_K | 32_K | 1.268 | 0.99 | |
| 246_Q | 252_T | 1.26 | 0.99 | |
| 75_C | 78_V | 1.252 | 0.99 | |
| 204_T | 207_G | 1.244 | 0.98 | |
| 261_W | 277_L | 1.241 | 0.98 | |
| 14_A | 17_I | 1.232 | 0.98 | |
| 50_P | 54_E | 1.227 | 0.98 | |
| 45_D | 48_S | 1.222 | 0.98 | |
| 162_D | 166_A | 1.22 | 0.98 | |
| 78_V | 81_L | 1.208 | 0.98 | |
| 51_G | 54_E | 1.204 | 0.98 | |
| 128_V | 200_L | 1.191 | 0.98 | |
| 17_I | 43_E | 1.186 | 0.98 | |
| 24_E | 28_K | 1.184 | 0.98 | |
| 97_D | 102_R | 1.183 | 0.98 | |
| 39_Y | 65_G | 1.166 | 0.97 | |
| 87_L | 141_A | 1.151 | 0.97 | |
| 164_A | 168_A | 1.15 | 0.97 | |
| 127_M | 143_G | 1.15 | 0.97 | |
| 136_S | 203_G | 1.149 | 0.97 | |
| 244_Q | 248_A | 1.142 | 0.97 | |
| 97_D | 100_Y | 1.134 | 0.97 | |
| 157_R | 162_D | 1.13 | 0.97 | |
| 26_Q | 263_G | 1.127 | 0.97 | |
| 18_R | 43_E | 1.117 | 0.96 | |
| 11_G | 64_T | 1.114 | 0.96 | |
| 17_I | 20_S | 1.11 | 0.96 | |
| 228_L | 253_I | 1.107 | 0.96 | |
| 10_I | 62_R | 1.104 | 0.96 | |
| 203_G | 232_C | 1.103 | 0.96 | |
| 68_M | 205_K | 1.1 | 0.96 | |
| 134_G | 138_A | 1.1 | 0.96 | |
| 260_L | 264_A | 1.096 | 0.96 | |
| 95_V | 104_Y | 1.092 | 0.96 | |
| 162_D | 165_L | 1.074 | 0.95 | |
| 12_L | 41_A | 1.072 | 0.95 | |
| 13_M | 66_V | 1.071 | 0.95 | |
| 44_V | 70_N | 1.069 | 0.95 | |
| 26_Q | 93_T | 1.064 | 0.95 | |
| 56_L | 61_M | 1.057 | 0.95 | |
| 52_A | 55_G | 1.057 | 0.95 | |
| 108_G | 142_Q | 1.052 | 0.95 | |
| 11_G | 41_A | 1.044 | 0.94 | |
| 57_K | 79_D | 1.039 | 0.94 | |
| 50_P | 77_Y | 1.038 | 0.94 | |
| 223_L | 229_V | 1.034 | 0.94 | |
| 81_L | 85_A | 1.019 | 0.93 | |
| 94_I | 103_G | 1.012 | 0.93 | |
| 9_L | 59_L | 1.011 | 0.93 | |
| 152_K | 197_A | 1.008 | 0.93 | |
| 27_N | 38_T | 1.005 | 0.93 | |
| 9_L | 38_T | 1 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3t4eA | 2 | 1 | 100 | 0.19 | Contact Map | 0.784 |
| 1npyA | 4 | 0.9201 | 100 | 0.212 | Contact Map | 0.78 |
| 3tnlA | 4 | 0.9896 | 100 | 0.226 | Contact Map | 0.818 |
| 2o7sA | 1 | 0.9444 | 100 | 0.263 | Contact Map | 0.756 |
| 3phhA | 1 | 0.8854 | 100 | 0.273 | Contact Map | 0.778 |
| 3fbtA | 4 | 0.934 | 100 | 0.281 | Contact Map | 0.831 |
| 3pwzA | 1 | 0.934 | 100 | 0.293 | Contact Map | 0.774 |
| 3jyoA | 1 | 0.9583 | 100 | 0.293 | Contact Map | 0.769 |
| 2d5cA | 2 | 0.9062 | 100 | 0.306 | Contact Map | 0.77 |
| 3donA | 1 | 0.9201 | 100 | 0.318 | Contact Map | 0.768 |
Sequence Conservation (Image Generated using WebLogo v3)