| UniProt: | P07021 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11152 | ||
| Length: | 160 (145) | ||
| Sequences: | 1476 | ||
| Seq/Len: | 10.18 |
| YFIB
Paralog alert: 0.57 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: PAL YFIB YIAD |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 57_A | 64_L | 5.391 | 1.00 | |
| 59_N | 100_Y | 4.062 | 1.00 | |
| 102_E | 106_L | 3.302 | 1.00 | |
| 91_H | 136_Y | 3.262 | 1.00 | |
| 139_A | 146_G | 3.143 | 1.00 | |
| 141_N | 146_G | 2.82 | 1.00 | |
| 72_Q | 115_A | 2.705 | 1.00 | |
| 140_S | 146_G | 2.684 | 1.00 | |
| 72_Q | 119_G | 2.671 | 1.00 | |
| 71_I | 115_A | 2.615 | 1.00 | |
| 61_Y | 107_K | 2.394 | 1.00 | |
| 89_D | 132_L | 2.347 | 1.00 | |
| 132_L | 136_Y | 2.342 | 1.00 | |
| 103_G | 107_K | 2.319 | 1.00 | |
| 95_Y | 147_R | 2.272 | 1.00 | |
| 98_D | 134_K | 2.251 | 1.00 | |
| 63_L | 67_S | 2.21 | 1.00 | |
| 105_S | 131_G | 2.02 | 1.00 | |
| 58_K | 95_Y | 1.993 | 1.00 | |
| 57_A | 60_D | 1.967 | 1.00 | |
| 100_Y | 103_G | 1.92 | 1.00 | |
| 143_T | 146_G | 1.895 | 1.00 | |
| 98_D | 135_K | 1.788 | 1.00 | |
| 141_N | 147_R | 1.72 | 1.00 | |
| 100_Y | 134_K | 1.638 | 1.00 | |
| 93_D | 101_N | 1.619 | 1.00 | |
| 86_A | 127_L | 1.588 | 1.00 | |
| 88_M | 113_A | 1.585 | 1.00 | |
| 63_L | 115_A | 1.549 | 1.00 | |
| 106_L | 110_N | 1.439 | 1.00 | |
| 115_A | 119_G | 1.414 | 1.00 | |
| 76_A | 79_A | 1.372 | 0.99 | |
| 89_D | 136_Y | 1.367 | 0.99 | |
| 31_V | 35_Q | 1.323 | 0.99 | |
| 117_A | 127_L | 1.282 | 0.99 | |
| 89_D | 130_Q | 1.253 | 0.99 | |
| 122_I | 126_N | 1.244 | 0.98 | |
| 113_A | 127_L | 1.218 | 0.98 | |
| 139_A | 149_E | 1.176 | 0.98 | |
| 142_K | 146_G | 1.16 | 0.97 | |
| 97_E | 100_Y | 1.16 | 0.97 | |
| 79_A | 123_P | 1.159 | 0.97 | |
| 122_I | 127_L | 1.143 | 0.97 | |
| 58_K | 100_Y | 1.138 | 0.97 | |
| 117_A | 124_R | 1.138 | 0.97 | |
| 113_A | 129_T | 1.111 | 0.96 | |
| 87_R | 158_T | 1.096 | 0.96 | |
| 89_D | 156_V | 1.091 | 0.96 | |
| 102_E | 135_K | 1.078 | 0.95 | |
| 94_N | 147_R | 1.06 | 0.95 | |
| 59_N | 107_K | 1.058 | 0.95 | |
| 47_S | 156_V | 1.058 | 0.95 | |
| 77_K | 81_T | 1.053 | 0.95 | |
| 140_S | 143_T | 1.034 | 0.94 | |
| 28_P | 31_V | 1.027 | 0.94 | |
| 137_P | 141_N | 1.015 | 0.93 | |
| 113_A | 117_A | 1.007 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3ldtA | 1 | 0.975 | 100 | 0.27 | Contact Map | 0.374 |
| 2k1sA | 1 | 0.8438 | 100 | 0.312 | Contact Map | 0.566 |
| 2l26A | 1 | 0.9938 | 100 | 0.321 | Contact Map | 0.283 |
| 2hqsH | 4 | 0.7063 | 100 | 0.329 | Contact Map | 0.755 |
| 1r1mA | 1 | 0.7625 | 100 | 0.33 | Contact Map | 0.539 |
| 2zf8A | 1 | 0.8812 | 100 | 0.332 | Contact Map | 0.441 |
| 3s06A | 2 | 0.8562 | 100 | 0.333 | Contact Map | 0.577 |
| 3s0yA | 2 | 0.9563 | 100 | 0.333 | Contact Map | 0.592 |
| 4b62A | 1 | 0.8812 | 100 | 0.34 | Contact Map | 0.638 |
| 3khnA | 2 | 0.9375 | 100 | 0.349 | Contact Map | 0.703 |
Sequence Conservation (Image Generated using WebLogo v3)