May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DXS - ISPA
UniProt: P77488 - P22939
Length: 919
Sequences: 758
Seq/Len: 0.83
I_Prob: 0.00

DXS - 1-deoxy-D-xylulose-5-phosphate synthase
Paralog alert: 0.76 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: DXS TKT1 TKT2
ISPA - Farnesyl diphosphate synthase
Paralog alert: 0.78 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: ISPA ISPB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
166_H 251_P 1.07 0.00
31_L 250_Y 1.00 0.00
286_R 40_A 1.00 0.00
421_A 271_R 0.95 0.00
228_R 73_V 0.94 0.00
192_L 194_A 0.93 0.00
205_Y 179_R 0.93 0.00
174_M 231_D 0.93 0.00
149_V 34_E 0.93 0.00
53_G 75_C 0.92 0.00
154_A 105_F 0.92 0.00
133_I 230_G 0.90 0.00
437_L 271_R 0.89 0.00
558_E 259_A 0.89 0.00
543_I 19_S 0.89 0.00
314_S 75_C 0.88 0.00
464_G 239_Q 0.87 0.00
305_D 75_C 0.86 0.00
515_M 50_F 0.86 0.00
437_L 135_D 0.85 0.00
79_G 46_R 0.85 0.00
50_F 294_I 0.84 0.00
448_I 277_L 0.84 0.00
305_D 116_A 0.84 0.00
447_V 186_I 0.84 0.00
437_L 113_A 0.83 0.00
188_N 241_A 0.83 0.00
505_K 98_L 0.83 0.00
592_I 20_R 0.83 0.00
357_R 106_G 0.82 0.00
409_I 58_M 0.82 0.00
199_L 231_D 0.81 0.00
177_I 257_E 0.81 0.00
586_G 54_A 0.81 0.00
408_A 118_Q 0.81 0.00
376_F 3_F 0.81 0.00
448_I 171_L 0.80 0.00
502_R 14_A 0.80 0.00
52_S 111_I 0.80 0.00
606_L 18_L 0.79 0.00
619_L 294_I 0.79 0.00
394_T 231_D 0.79 0.00
326_G 107_E 0.79 0.00
202_G 75_C 0.78 0.00
297_T 47_L 0.78 0.00
613_A 126_S 0.78 0.00
119_S 177_I 0.78 0.00
177_I 165_E 0.78 0.00
324_I 62_S 0.78 0.00
111_G 189_A 0.78 0.00
199_L 146_A 0.78 0.00
177_I 186_I 0.77 0.00
338_K 58_M 0.77 0.00
199_L 233_A 0.77 0.00
594_Q 69_P 0.77 0.00
519_A 232_T 0.77 0.00
429_Q 294_I 0.77 0.00
246_L 111_I 0.76 0.00
196_L 7_L 0.76 0.00
446_M 281_S 0.76 0.00
554_V 218_A 0.76 0.00
605_G 34_E 0.76 0.00
492_L 193_G 0.76 0.00
258_D 118_Q 0.76 0.00
29_P 91_D 0.76 0.00
554_V 69_P 0.75 0.00
337_N 257_E 0.75 0.00
407_V 212_A 0.75 0.00
228_R 159_A 0.75 0.00
438_S 145_L 0.75 0.00
608_A 275_K 0.75 0.00
258_D 273_S 0.75 0.00
263_I 98_L 0.74 0.00
605_G 167_K 0.74 0.00
324_I 41_L 0.74 0.00
42_S 149_S 0.74 0.00
548_A 24_P 0.74 0.00
205_Y 217_L 0.73 0.00
371_Q 125_L 0.73 0.00
337_N 12_K 0.73 0.00
277_F 164_A 0.73 0.00
164_M 34_E 0.73 0.00
429_Q 215_I 0.73 0.00
209_R 251_P 0.73 0.00
429_Q 47_L 0.73 0.00
594_Q 94_L 0.73 0.00
189_V 36_M 0.73 0.00
339_L 168_H 0.73 0.00
380_L 98_L 0.73 0.00
591_F 47_L 0.73 0.00
270_R 256_L 0.73 0.00
121_G 101_C 0.73 0.00
139_K 7_L 0.73 0.00
541_A 268_D 0.72 0.00
161_F 91_D 0.72 0.00
435_F 271_R 0.72 0.00
88_L 100_T 0.72 0.00
439_Y 22_I 0.71 0.00
546_M 285_S 0.71 0.00
554_V 109_N 0.71 0.00
403_V 258_Q 0.71 0.00
157_A 299_K 0.71 0.00
210_E 105_F 0.71 0.00
315_S 170_P 0.71 0.00
500_K 120_L 0.71 0.00
263_I 211_Y 0.71 0.00
494_I 108_A 0.71 0.00
465_Y 123_S 0.70 0.00
592_I 2_D 0.70 0.00
305_D 12_K 0.70 0.00
89_T 102_H 0.70 0.00
432_Q 277_L 0.70 0.00
410_Q 156_G 0.70 0.00
254_V 198_G 0.70 0.00
22_L 244_Q 0.70 0.00
261_G 277_L 0.70 0.00
319_P 183_G 0.69 0.00
187_E 29_N 0.69 0.00
476_Y 32_V 0.69 0.00
600_M 82_I 0.69 0.00
440_L 166_G 0.69 0.00
399_A 265_D 0.69 0.00
61_V 145_L 0.69 0.00
205_Y 49_P 0.69 0.00
109_W 100_T 0.69 0.00
186_S 192_L 0.69 0.00
177_I 231_D 0.69 0.00
601_R 246_G 0.68 0.00
376_F 102_H 0.68 0.00
500_K 132_E 0.68 0.00
354_E 189_A 0.68 0.00
166_H 222_Q 0.68 0.00
146_T 86_L 0.68 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0733 seconds.