May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

C56I - YCEI
UniProt: P75925 - P0A8X2
Length: 379
Sequences: 288
Seq/Len: 0.78
I_Prob: 0.00

C56I - Cytochrome b561 homolog 2
Paralog alert: 0.76 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: C561 C56H C56I
YCEI - Protein YceI
Paralog alert: 0.27 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: YCEI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
167_H 68_A 1.40 0.00
96_A 73_V 1.32 0.00
55_I 122_T 1.25 0.00
23_I 101_K 1.24 0.00
156_S 98_N 1.22 0.00
104_I 136_L 1.19 0.00
179_L 99_T 1.18 0.00
171_K 1_M 1.18 0.00
157_V 99_T 1.16 0.00
174_T 57_G 1.14 0.00
97_L 49_Y 1.07 0.00
116_G 86_E 1.07 0.00
25_V 134_V 1.06 0.00
129_A 35_F 1.05 0.00
83_S 27_I 1.05 0.00
57_I 161_I 1.04 0.00
20_L 12_S 1.04 0.00
102_F 118_E 1.03 0.00
110_L 81_D 1.01 0.00
123_G 61_F 1.01 0.00
150_W 56_D 1.00 0.00
104_I 98_N 0.99 0.00
107_S 165_D 0.99 0.00
60_M 138_A 0.97 0.00
64_V 85_A 0.96 0.00
25_V 102_Y 0.95 0.00
180_G 166_F 0.94 0.00
107_S 25_Y 0.94 0.00
156_S 7_G 0.94 0.00
171_K 4_S 0.93 0.00
169_I 66_P 0.92 0.00
15_A 103_P 0.92 0.00
6_T 75_I 0.91 0.00
31_L 168_I 0.91 0.00
118_P 91_L 0.90 0.00
130_T 189_Q 0.90 0.00
157_V 70_K 0.90 0.00
152_V 157_A 0.90 0.00
97_L 38_F 0.90 0.00
65_I 161_I 0.89 0.00
134_A 30_E 0.89 0.00
93_G 6_L 0.89 0.00
115_D 77_T 0.88 0.00
6_T 124_D 0.88 0.00
171_K 16_S 0.88 0.00
16_A 120_D 0.88 0.00
38_L 38_F 0.88 0.00
90_A 181_L 0.88 0.00
60_M 139_K 0.88 0.00
104_I 157_A 0.88 0.00
102_F 93_S 0.87 0.00
137_Q 34_A 0.87 0.00
149_A 88_D 0.87 0.00
167_H 144_G 0.87 0.00
107_S 167_N 0.87 0.00
174_T 131_T 0.87 0.00
71_V 116_G 0.87 0.00
57_I 178_E 0.87 0.00
27_G 60_T 0.87 0.00
104_I 27_I 0.86 0.00
83_S 138_A 0.86 0.00
38_L 168_I 0.86 0.00
129_A 61_F 0.85 0.00
87_R 125_L 0.85 0.00
16_A 67_A 0.85 0.00
17_F 113_K 0.84 0.00
88_L 36_V 0.84 0.00
112_S 48_L 0.84 0.00
100_L 190_Q 0.84 0.00
119_I 59_F 0.84 0.00
99_L 67_A 0.83 0.00
162_M 4_S 0.83 0.00
77_G 161_I 0.83 0.00
162_M 15_F 0.83 0.00
123_G 94_A 0.83 0.00
112_S 77_T 0.83 0.00
65_I 93_S 0.83 0.00
104_I 132_K 0.83 0.00
151_S 102_Y 0.83 0.00
125_F 96_F 0.83 0.00
165_K 54_D 0.83 0.00
150_W 65_N 0.82 0.00
109_Y 77_T 0.82 0.00
156_S 69_D 0.82 0.00
31_L 71_V 0.82 0.00
181_K 12_S 0.82 0.00
14_S 145_D 0.81 0.00
58_L 138_A 0.81 0.00
113_T 146_D 0.81 0.00
109_Y 163_L 0.81 0.00
119_I 77_T 0.80 0.00
33_L 73_V 0.80 0.00
158_M 49_Y 0.80 0.00
25_V 133_P 0.80 0.00
164_L 78_T 0.80 0.00
22_A 100_A 0.80 0.00
20_L 69_D 0.80 0.00
10_Y 51_T 0.80 0.00
26_Y 159_G 0.80 0.00
67_V 102_Y 0.80 0.00
50_E 41_Q 0.80 0.00
9_R 8_L 0.80 0.00
7_P 5_L 0.79 0.00
75_P 61_F 0.79 0.00
119_I 71_V 0.79 0.00
64_V 108_T 0.79 0.00
111_I 40_I 0.79 0.00
53_K 65_N 0.79 0.00
26_Y 29_K 0.78 0.00
107_S 135_T 0.78 0.00
90_A 121_I 0.78 0.00
164_L 133_P 0.78 0.00
71_V 76_N 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0343 seconds.