May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RUTA - RUTF
UniProt: P75898 - P75893
Length: 546
Sequences: 448
Seq/Len: 0.88
I_Prob: 0.00

RUTA - Pyrimidine monooxygenase RutA
Paralog alert: 0.66 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: RUTA SSUD YHBW
RUTF - FMN reductase (NADH) RutF
Paralog alert: 0.51 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: RUTF YDDH
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
309_M 110_L 1.00 0.00
327_Y 148_G 0.94 0.00
249_Q 61_P 0.91 0.00
102_I 23_I 0.90 0.00
269_D 12_A 0.90 0.00
175_G 18_A 0.89 0.00
58_H 133_L 0.89 0.00
169_V 53_L 0.89 0.00
61_F 95_F 0.87 0.00
364_I 23_I 0.86 0.00
296_K 37_S 0.84 0.00
52_I 137_I 0.84 0.00
66_S 23_I 0.83 0.00
330_V 98_A 0.83 0.00
276_E 157_H 0.83 0.00
269_D 105_T 0.83 0.00
303_D 132_I 0.83 0.00
323_L 9_F 0.83 0.00
357_I 110_L 0.83 0.00
185_F 78_Q 0.81 0.00
335_D 45_T 0.81 0.00
203_V 78_Q 0.81 0.00
64_A 113_A 0.80 0.00
184_D 86_G 0.80 0.00
183_G 23_I 0.80 0.00
238_P 5_D 0.78 0.00
370_C 137_I 0.78 0.00
203_V 22_I 0.78 0.00
216_S 45_T 0.78 0.00
61_F 70_C 0.77 0.00
187_T 9_F 0.76 0.00
332_R 134_F 0.76 0.00
343_A 150_V 0.76 0.00
128_G 134_F 0.75 0.00
45_T 134_F 0.74 0.00
93_L 75_S 0.74 0.00
360_F 78_Q 0.74 0.00
98_S 133_L 0.73 0.00
330_V 155_S 0.73 0.00
46_F 137_I 0.73 0.00
305_N 71_V 0.72 0.00
265_D 121_I 0.72 0.00
265_D 45_T 0.72 0.00
301_G 36_A 0.72 0.00
66_S 36_A 0.72 0.00
248_E 5_D 0.72 0.00
99_R 23_I 0.71 0.00
269_D 144_T 0.71 0.00
368_M 86_G 0.71 0.00
364_I 41_S 0.70 0.00
330_V 123_Q 0.70 0.00
342_G 52_C 0.70 0.00
94_A 73_T 0.70 0.00
346_V 121_I 0.70 0.00
282_A 22_I 0.69 0.00
273_A 11_D 0.69 0.00
327_Y 132_I 0.69 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.016 seconds.