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OPENSEQ.org

HDA - PARE
UniProt: P69931 - P20083
Length: 863
Sequences: 663
Seq/Len: 0.79
I_Prob: 0.00

HDA - DnaA regulatory inactivator Hda
Paralog alert: 0.41 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HDA
PARE - DNA topoisomerase 4 subunit B
Paralog alert: 0.70 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: GYRB PARE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
188_D 213_W 1.13 0.00
75_G 505_L 1.12 0.00
79_L 387_V 1.11 0.00
189_V 586_L 1.09 0.00
135_T 243_A 1.03 0.00
52_E 168_W 1.03 0.00
23_W 483_G 1.02 0.00
74_V 76_V 1.02 0.00
113_W 53_K 1.02 0.00
122_N 118_V 1.01 0.00
223_T 590_T 1.00 0.00
164_P 84_V 1.00 0.00
197_L 230_L 0.96 0.00
100_C 156_C 0.95 0.00
138_R 468_I 0.95 0.00
123_R 407_Q 0.94 0.00
128_G 515_K 0.93 0.00
170_K 341_Q 0.93 0.00
162_L 84_V 0.93 0.00
209_D 431_D 0.91 0.00
39_R 181_V 0.91 0.00
188_D 124_K 0.91 0.00
225_P 228_N 0.90 0.00
192_F 102_N 0.90 0.00
227_V 291_M 0.90 0.00
192_F 180_S 0.89 0.00
223_T 219_L 0.89 0.00
182_G 308_S 0.88 0.00
122_N 290_A 0.88 0.00
73_A 630_V 0.88 0.00
223_T 324_M 0.88 0.00
158_Q 44_V 0.87 0.00
113_W 70_D 0.87 0.00
52_E 191_K 0.87 0.00
133_L 156_C 0.86 0.00
113_W 90_I 0.86 0.00
24_P 125_R 0.86 0.00
21_S 225_E 0.86 0.00
192_F 455_V 0.86 0.00
101_I 464_I 0.86 0.00
151_A 628_I 0.86 0.00
113_W 470_I 0.86 0.00
179_R 385_K 0.85 0.00
27_N 255_W 0.85 0.00
227_V 415_F 0.85 0.00
67_L 507_V 0.85 0.00
17_E 385_K 0.84 0.00
114_E 449_E 0.84 0.00
138_R 190_A 0.84 0.00
222_L 416_L 0.84 0.00
132_L 219_L 0.83 0.00
108_A 361_N 0.83 0.00
49_W 387_V 0.83 0.00
151_A 89_L 0.83 0.00
33_A 514_V 0.83 0.00
184_E 171_E 0.83 0.00
224_I 586_L 0.82 0.00
61_H 602_M 0.82 0.00
62_A 195_C 0.82 0.00
69_Q 609_K 0.82 0.00
185_L 385_K 0.82 0.00
170_K 329_F 0.81 0.00
167_D 530_D 0.81 0.00
143_L 441_K 0.81 0.00
227_V 586_L 0.81 0.00
161_K 507_V 0.81 0.00
163_Q 359_N 0.81 0.00
138_R 188_L 0.81 0.00
210_Q 486_C 0.81 0.00
77_V 225_E 0.80 0.00
109_G 457_A 0.80 0.00
192_F 303_R 0.79 0.00
182_G 588_Q 0.79 0.00
61_H 245_D 0.79 0.00
133_L 609_K 0.79 0.00
189_V 147_V 0.79 0.00
156_W 52_A 0.78 0.00
143_L 459_Q 0.78 0.00
199_R 358_L 0.78 0.00
79_L 616_R 0.78 0.00
77_V 394_G 0.78 0.00
60_L 431_D 0.78 0.00
20_A 228_N 0.78 0.00
73_A 381_R 0.78 0.00
187_E 256_L 0.78 0.00
60_L 347_S 0.77 0.00
74_V 588_Q 0.77 0.00
204_L 378_R 0.77 0.00
147_L 40_I 0.77 0.00
160_Y 480_L 0.77 0.00
163_Q 272_P 0.76 0.00
225_P 212_R 0.76 0.00
107_I 242_F 0.76 0.00
107_I 458_S 0.76 0.00
160_Y 496_L 0.76 0.00
152_S 317_A 0.76 0.00
232_K 415_F 0.76 0.00
196_R 236_K 0.76 0.00
96_L 91_L 0.76 0.00
141_R 613_E 0.76 0.00
143_L 357_W 0.76 0.00
20_A 8_D 0.75 0.00
179_R 344_A 0.74 0.00
148_P 243_A 0.74 0.00
131_R 70_D 0.74 0.00
109_G 357_W 0.74 0.00
119_D 215_Y 0.74 0.00
101_I 90_I 0.74 0.00
107_I 280_V 0.74 0.00
128_G 365_A 0.74 0.00
191_R 60_H 0.74 0.00
20_A 77_D 0.74 0.00
90_L 377_Q 0.74 0.00
217_T 107_F 0.74 0.00
151_A 451_S 0.74 0.00
198_D 37_Q 0.74 0.00
218_A 169_P 0.73 0.00
89_V 192_A 0.73 0.00
204_L 618_W 0.73 0.00
107_I 183_R 0.73 0.00
98_L 361_N 0.73 0.00
51_R 609_K 0.73 0.00
107_I 391_L 0.73 0.00
64_C 345_F 0.73 0.00
211_L 480_L 0.73 0.00
193_L 51_H 0.72 0.00
182_G 547_V 0.72 0.00
194_L 267_Y 0.72 0.00
43_S 227_V 0.72 0.00
72_D 249_V 0.72 0.00
84_W 396_A 0.72 0.00
209_D 179_F 0.72 0.00
210_Q 118_V 0.72 0.00
152_S 347_S 0.72 0.00
48_L 519_V 0.71 0.00
214_A 598_R 0.71 0.00
26_D 554_K 0.71 0.00
76_Y 250_D 0.71 0.00
178_A 596_D 0.71 0.00
26_D 165_V 0.71 0.00
52_E 431_D 0.71 0.00
125_L 284_R 0.71 0.00
198_D 77_D 0.71 0.00
113_W 7_A 0.71 0.00
156_W 609_K 0.71 0.00
20_A 479_Q 0.71 0.00
116_A 329_F 0.70 0.00
133_L 512_A 0.70 0.00
63_A 205_E 0.70 0.00
152_S 405_T 0.70 0.00
187_E 354_F 0.70 0.00
49_W 55_V 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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