May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

HDA - YBCJ
UniProt: P69931 - P0AAS7
Length: 303
Sequences: 245
Seq/Len: 0.86
I_Prob: 0.00

HDA - DnaA regulatory inactivator Hda
Paralog alert: 0.41 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HDA
YBCJ - Uncharacterized protein YbcJ
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBCJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
101_I 1_M 1.28 0.00
86_V 4_F 1.26 0.00
171_L 28_A 1.25 0.00
133_L 58_T 1.22 0.00
74_V 11_H 1.17 0.00
160_Y 1_M 1.13 0.00
62_A 17_L 1.11 0.00
198_D 13_E 1.10 0.00
27_N 34_I 1.09 0.00
199_R 5_S 1.07 0.00
127_S 24_S 1.06 0.00
134_I 11_H 1.05 0.00
231_L 16_D 1.04 0.00
133_L 66_V 1.02 0.00
208_L 46_E 1.01 0.00
175_Q 60_S 1.01 0.00
46_I 50_R 1.01 0.00
185_L 4_F 1.00 0.00
100_C 48_R 1.00 0.00
163_Q 32_I 0.99 0.00
181_R 17_L 0.99 0.00
62_A 28_A 0.99 0.00
21_S 16_D 0.98 0.00
196_R 34_I 0.97 0.00
89_V 34_I 0.96 0.00
98_L 23_W 0.95 0.00
107_I 52_K 0.94 0.00
49_W 53_I 0.93 0.00
67_L 4_F 0.93 0.00
186_P 39_V 0.92 0.00
37_V 58_T 0.92 0.00
20_A 16_D 0.92 0.00
175_Q 29_Q 0.92 0.00
176_L 4_F 0.91 0.00
167_D 28_A 0.91 0.00
76_Y 49_K 0.89 0.00
98_L 45_V 0.88 0.00
62_A 18_L 0.88 0.00
209_D 22_G 0.86 0.00
40_Q 9_H 0.86 0.00
92_G 4_F 0.85 0.00
205_F 49_K 0.84 0.00
169_D 49_K 0.84 0.00
63_A 23_W 0.83 0.00
90_L 59_V 0.83 0.00
17_E 5_S 0.82 0.00
108_A 28_A 0.82 0.00
62_A 9_H 0.82 0.00
178_A 6_L 0.82 0.00
60_L 16_D 0.81 0.00
27_N 33_A 0.81 0.00
221_K 47_T 0.81 0.00
26_D 15_C 0.81 0.00
226_F 39_V 0.81 0.00
26_D 6_L 0.80 0.00
74_V 20_L 0.80 0.00
74_V 51_C 0.79 0.00
231_L 15_C 0.79 0.00
164_P 28_A 0.79 0.00
123_R 61_F 0.79 0.00
127_S 34_I 0.79 0.00
117_I 46_E 0.79 0.00
228_K 48_R 0.78 0.00
76_Y 31_K 0.78 0.00
209_D 54_V 0.78 0.00
169_D 50_R 0.78 0.00
123_R 54_V 0.78 0.00
198_D 24_S 0.78 0.00
182_G 23_W 0.78 0.00
27_N 15_C 0.77 0.00
196_R 62_A 0.76 0.00
152_S 30_A 0.76 0.00
199_R 35_A 0.76 0.00
210_Q 17_L 0.76 0.00
210_Q 60_S 0.76 0.00
64_C 18_L 0.75 0.00
174_L 48_R 0.75 0.00
199_R 26_S 0.75 0.00
185_L 15_C 0.75 0.00
183_F 6_L 0.74 0.00
152_S 32_I 0.74 0.00
128_G 8_K 0.74 0.00
182_G 22_G 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0443 seconds.