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OPENSEQ.org

RL2 - SECY
UniProt: P60422 - P0AGA2
Length: 716
Sequences: 825
Seq/Len: 1.17
I_Prob: 0.01

RL2 - 50S ribosomal protein L2
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL2
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
175_R 420_V 1.33 0.01
141_V 92_I 1.15 0.00
238_R 235_V 1.12 0.00
201_M 65_N 1.11 0.00
232_H 436_A 1.08 0.00
116_I 364_K 1.07 0.00
70_N 325_I 1.07 0.00
94_V 322_A 1.06 0.00
13_R 275_I 1.05 0.00
38_S 330_F 1.04 0.00
37_N 387_I 1.04 0.00
124_I 192_F 1.02 0.00
114_D 31_I 1.02 0.00
210_A 416_F 1.01 0.00
152_G 105_I 0.99 0.00
125_K 275_I 0.99 0.00
252_T 171_L 0.98 0.00
176_L 164_L 0.98 0.00
181_M 413_I 0.98 0.00
223_T 415_D 0.97 0.00
240_F 87_S 0.97 0.00
251_Q 220_L 0.97 0.00
141_V 295_G 0.96 0.00
196_G 75_A 0.96 0.00
36_K 168_T 0.95 0.00
61_A 44_I 0.95 0.00
266_F 44_I 0.94 0.00
48_R 63_M 0.94 0.00
246_T 67_F 0.93 0.00
88_S 232_F 0.93 0.00
266_F 49_L 0.93 0.00
183_K 425_M 0.93 0.00
45_N 272_A 0.93 0.00
5_K 18_E 0.92 0.00
191_T 228_F 0.92 0.00
118_S 132_S 0.92 0.00
166_A 317_Y 0.92 0.00
11_P 384_I 0.92 0.00
152_G 207_I 0.92 0.00
238_R 318_V 0.92 0.00
74_I 229_A 0.92 0.00
116_I 47_A 0.91 0.00
22_P 265_L 0.91 0.00
264_D 71_A 0.91 0.00
64_I 422_T 0.91 0.00
185_E 369_V 0.90 0.00
201_M 384_I 0.90 0.00
196_G 95_L 0.90 0.00
64_I 323_S 0.90 0.00
68_K 360_E 0.89 0.00
154_L 23_L 0.88 0.00
77_V 162_V 0.88 0.00
199_E 347_K 0.88 0.00
242_K 422_T 0.88 0.00
102_R 369_V 0.87 0.00
41_G 75_A 0.87 0.00
102_R 249_A 0.87 0.00
36_K 65_N 0.87 0.00
70_N 311_Q 0.87 0.00
157_S 220_L 0.87 0.00
161_Y 246_V 0.86 0.00
144_V 211_R 0.86 0.00
11_P 246_V 0.86 0.00
198_A 75_A 0.86 0.00
185_E 104_E 0.85 0.00
167_R 21_R 0.85 0.00
108_K 125_L 0.85 0.00
73_G 174_L 0.85 0.00
253_K 87_S 0.85 0.00
70_N 158_F 0.85 0.00
94_V 394_A 0.85 0.00
94_V 166_T 0.85 0.00
202_L 361_Q 0.85 0.00
10_S 127_L 0.84 0.00
160_T 326_I 0.84 0.00
2_A 66_M 0.84 0.00
79_E 249_A 0.84 0.00
111_K 373_L 0.83 0.00
74_I 378_A 0.83 0.00
181_M 149_V 0.83 0.00
252_T 168_T 0.83 0.00
80_R 342_T 0.83 0.00
172_V 260_A 0.83 0.00
26_K 139_L 0.83 0.00
256_K 37_S 0.83 0.00
175_R 189_I 0.82 0.00
132_M 199_L 0.82 0.00
74_I 233_F 0.82 0.00
242_K 122_Y 0.82 0.00
223_T 367_D 0.82 0.00
58_H 406_L 0.82 0.00
198_A 378_A 0.82 0.00
147_K 138_G 0.82 0.00
199_E 373_L 0.82 0.00
10_S 282_S 0.82 0.00
166_A 97_V 0.82 0.00
31_A 31_I 0.82 0.00
11_P 96_T 0.82 0.00
224_A 66_M 0.81 0.00
59_K 161_V 0.81 0.00
144_V 379_L 0.81 0.00
192_L 132_S 0.81 0.00
76_A 425_M 0.81 0.00
109_G 194_G 0.81 0.00
130_L 31_I 0.81 0.00
263_T 385_C 0.81 0.00
261_K 43_G 0.80 0.00
61_A 356_I 0.80 0.00
238_R 38_F 0.80 0.00
94_V 232_F 0.79 0.00
25_H 411_V 0.79 0.00
205_L 170_F 0.79 0.00
224_A 218_L 0.79 0.00
146_M 27_I 0.79 0.00
121_D 390_F 0.79 0.00
111_K 307_S 0.79 0.00
184_V 91_I 0.79 0.00
252_T 89_S 0.79 0.00
214_R 148_L 0.79 0.00
41_G 197_A 0.79 0.00
155_A 174_L 0.79 0.00
192_L 218_L 0.79 0.00
265_K 77_I 0.79 0.00
108_K 277_A 0.79 0.00
152_G 261_Q 0.79 0.00
143_N 126_V 0.78 0.00
157_S 132_S 0.78 0.00
177_R 351_A 0.78 0.00
268_V 190_I 0.78 0.00
2_A 268_K 0.78 0.00
90_N 341_E 0.78 0.00
23_E 102_L 0.78 0.00
129_T 193_A 0.78 0.00
198_A 243_R 0.78 0.00
141_V 124_T 0.78 0.00
132_M 365_Y 0.78 0.00
167_R 39_I 0.78 0.00
80_R 380_Y 0.77 0.00
121_D 50_A 0.77 0.00
39_K 320_L 0.77 0.00
173_T 76_S 0.77 0.00
246_T 282_S 0.77 0.00
41_G 263_T 0.77 0.00
119_G 95_L 0.77 0.00
170_A 136_A 0.77 0.00
228_V 148_L 0.77 0.00
268_V 234_V 0.76 0.00
184_V 190_I 0.76 0.00
184_V 236_F 0.76 0.00
3_V 277_A 0.76 0.00
118_S 317_Y 0.76 0.00
184_V 320_L 0.76 0.00
176_L 222_L 0.76 0.00
64_I 235_V 0.76 0.00
203_R 363_A 0.75 0.00
216_V 335_L 0.75 0.00
10_S 80_L 0.75 0.00
60_Q 390_F 0.75 0.00
18_K 366_I 0.75 0.00
183_K 370_M 0.75 0.00
205_L 220_L 0.75 0.00
64_I 401_F 0.75 0.00
68_K 48_V 0.75 0.00
20_V 370_M 0.75 0.00
202_L 76_S 0.75 0.00
162_V 349_S 0.75 0.00
238_R 161_V 0.75 0.00
239_N 327_F 0.75 0.00
3_V 306_I 0.75 0.00
246_T 228_F 0.75 0.00
44_N 96_T 0.74 0.00
49_I 91_I 0.74 0.00
243_H 124_T 0.74 0.00
110_L 321_Y 0.74 0.00
20_V 240_G 0.74 0.00
142_H 338_N 0.74 0.00
224_A 284_I 0.74 0.00
224_A 308_L 0.74 0.00
10_S 180_E 0.74 0.00
214_R 181_R 0.74 0.00
269_R 194_G 0.74 0.00
126_P 229_A 0.74 0.00
120_V 224_A 0.73 0.00
192_L 272_A 0.73 0.00
228_V 399_F 0.73 0.00
181_M 196_V 0.73 0.00
109_G 45_D 0.73 0.00
147_K 234_V 0.73 0.00
268_V 387_I 0.73 0.00
73_G 101_T 0.73 0.00
105_L 47_A 0.73 0.00
202_L 250_K 0.73 0.00
105_L 218_L 0.73 0.00
115_Q 353_V 0.73 0.00
202_L 349_S 0.73 0.00
166_A 347_K 0.73 0.00
46_N 233_F 0.73 0.00
19_V 378_A 0.73 0.00
65_V 32_V 0.73 0.00
27_G 32_V 0.73 0.00
200_H 366_I 0.72 0.00
39_K 423_L 0.72 0.00
198_A 125_L 0.72 0.00
147_K 250_K 0.72 0.00
165_V 118_Q 0.72 0.00
109_G 116_I 0.72 0.00
160_T 272_A 0.72 0.00
94_V 225_V 0.72 0.00
155_A 159_T 0.72 0.00
246_T 102_L 0.72 0.00
174_L 150_I 0.72 0.00
256_K 28_G 0.72 0.00
170_A 415_D 0.72 0.00
204_V 45_D 0.72 0.00
167_R 283_I 0.72 0.00
23_E 256_R 0.72 0.00
117_Q 49_L 0.72 0.00
80_R 181_R 0.72 0.00
144_V 315_P 0.71 0.00
256_K 368_K 0.71 0.00
37_N 197_A 0.71 0.00
120_V 221_L 0.71 0.00
34_L 284_I 0.71 0.00
81_L 366_I 0.71 0.00
240_F 238_E 0.71 0.00
10_S 329_C 0.71 0.00
141_V 438_L 0.71 0.00
51_T 37_S 0.71 0.00
77_V 231_T 0.71 0.00
79_E 384_I 0.71 0.00
173_T 259_A 0.71 0.00
48_R 330_F 0.71 0.00
105_L 63_M 0.71 0.00
251_Q 40_P 0.70 0.00
121_D 130_F 0.70 0.00
116_I 326_I 0.70 0.00
40_S 323_S 0.70 0.00
45_N 405_S 0.70 0.00
252_T 38_F 0.70 0.00
270_R 61_I 0.70 0.00
243_H 399_F 0.70 0.00
192_L 290_I 0.70 0.00
205_L 163_S 0.70 0.00
28_K 20_K 0.70 0.00
150_K 92_I 0.70 0.00
228_V 83_M 0.70 0.00
268_V 422_T 0.70 0.00
199_E 161_V 0.70 0.00
12_G 111_S 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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