| UniProt: | P60422 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10865 | ||
| Length: | 273 (272) | ||
| Sequences: | 1275 | ||
| Seq/Len: | 4.69 |
| RL2
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 76_A | 94_V | 3.641 | 1.00 | |
| 143_N | 152_G | 3.353 | 1.00 | |
| 172_V | 186_A | 3.183 | 1.00 | |
| 79_E | 95_L | 2.984 | 1.00 | |
| 26_K | 80_R | 2.938 | 1.00 | |
| 58_H | 213_W | 2.856 | 1.00 | |
| 150_K | 153_Q | 2.853 | 1.00 | |
| 139_S | 192_L | 2.841 | 1.00 | |
| 53_H | 219_T | 2.835 | 1.00 | |
| 164_I | 172_V | 2.787 | 1.00 | |
| 223_T | 240_F | 2.777 | 1.00 | |
| 72_D | 189_R | 2.769 | 1.00 | |
| 141_V | 164_I | 2.68 | 1.00 | |
| 111_K | 114_D | 2.647 | 1.00 | |
| 155_A | 162_V | 2.597 | 1.00 | |
| 37_N | 60_Q | 2.548 | 1.00 | |
| 216_V | 219_T | 2.484 | 1.00 | |
| 173_T | 181_M | 2.444 | 1.00 | |
| 70_N | 102_R | 2.408 | 1.00 | |
| 94_V | 116_I | 2.407 | 1.00 | |
| 174_L | 184_V | 2.402 | 1.00 | |
| 144_V | 162_V | 2.279 | 1.00 | |
| 54_I | 216_V | 2.246 | 1.00 | |
| 44_N | 50_T | 2.185 | 1.00 | |
| 77_V | 115_Q | 2.179 | 1.00 | |
| 129_T | 189_R | 2.17 | 1.00 | |
| 141_V | 174_L | 2.149 | 1.00 | |
| 170_A | 185_E | 2.149 | 1.00 | |
| 88_S | 200_H | 2.069 | 1.00 | |
| 108_K | 198_A | 2.055 | 1.00 | |
| 110_L | 116_I | 1.991 | 1.00 | |
| 205_L | 214_R | 1.977 | 1.00 | |
| 72_D | 118_S | 1.968 | 1.00 | |
| 211_A | 214_R | 1.956 | 1.00 | |
| 122_A | 130_L | 1.924 | 1.00 | |
| 166_A | 173_T | 1.924 | 1.00 | |
| 105_L | 143_N | 1.914 | 1.00 | |
| 194_E | 198_A | 1.908 | 1.00 | |
| 40_S | 54_I | 1.88 | 1.00 | |
| 131_P | 134_N | 1.872 | 1.00 | |
| 9_T | 13_R | 1.856 | 1.00 | |
| 90_N | 196_G | 1.832 | 1.00 | |
| 51_T | 219_T | 1.819 | 1.00 | |
| 242_K | 245_V | 1.816 | 1.00 | |
| 251_Q | 255_K | 1.813 | 1.00 | |
| 223_T | 239_N | 1.812 | 1.00 | |
| 19_V | 203_R | 1.801 | 1.00 | |
| 246_T | 250_V | 1.798 | 1.00 | |
| 71_K | 98_D | 1.793 | 1.00 | |
| 95_L | 101_R | 1.765 | 1.00 | |
| 148_P | 185_E | 1.749 | 1.00 | |
| 173_T | 183_K | 1.747 | 1.00 | |
| 133_R | 187_D | 1.734 | 1.00 | |
| 27_G | 80_R | 1.711 | 0.99 | |
| 105_L | 152_G | 1.686 | 0.99 | |
| 146_M | 184_V | 1.657 | 0.99 | |
| 75_P | 97_K | 1.617 | 0.99 | |
| 73_G | 121_D | 1.606 | 0.99 | |
| 77_V | 95_L | 1.597 | 0.99 | |
| 71_K | 100_E | 1.557 | 0.99 | |
| 19_V | 90_N | 1.547 | 0.99 | |
| 78_V | 110_L | 1.546 | 0.99 | |
| 107_P | 110_L | 1.543 | 0.99 | |
| 205_L | 211_A | 1.529 | 0.99 | |
| 65_V | 91_I | 1.497 | 0.98 | |
| 35_E | 64_I | 1.482 | 0.98 | |
| 211_A | 216_V | 1.462 | 0.98 | |
| 30_F | 101_R | 1.445 | 0.98 | |
| 135_I | 192_L | 1.441 | 0.98 | |
| 239_N | 242_K | 1.44 | 0.98 | |
| 252_T | 255_K | 1.435 | 0.98 | |
| 144_V | 174_L | 1.419 | 0.97 | |
| 154_L | 184_V | 1.411 | 0.97 | |
| 250_V | 255_K | 1.411 | 0.97 | |
| 6_C | 18_K | 1.407 | 0.97 | |
| 34_L | 61_A | 1.394 | 0.97 | |
| 154_L | 176_L | 1.373 | 0.97 | |
| 79_E | 101_R | 1.373 | 0.97 | |
| 240_F | 253_K | 1.347 | 0.96 | |
| 167_R | 186_A | 1.332 | 0.96 | |
| 108_K | 194_E | 1.317 | 0.95 | |
| 260_N | 263_T | 1.307 | 0.95 | |
| 114_D | 125_K | 1.299 | 0.95 | |
| 75_P | 115_Q | 1.272 | 0.94 | |
| 119_G | 130_L | 1.271 | 0.94 | |
| 73_G | 119_G | 1.26 | 0.94 | |
| 243_H | 253_K | 1.217 | 0.92 | |
| 53_H | 216_V | 1.194 | 0.91 | |
| 54_I | 219_T | 1.183 | 0.91 | |
| 185_E | 266_F | 1.182 | 0.91 | |
| 74_I | 97_K | 1.177 | 0.90 | |
| 147_K | 150_K | 1.169 | 0.90 | |
| 3_V | 17_V | 1.168 | 0.90 | |
| 240_F | 243_H | 1.163 | 0.90 | |
| 24_L | 27_G | 1.157 | 0.89 | |
| 80_R | 112_A | 1.155 | 0.89 | |
| 223_T | 243_H | 1.154 | 0.89 | |
| 13_R | 16_V | 1.15 | 0.89 | |
| 232_H | 245_V | 1.14 | 0.88 | |
| 15_H | 204_V | 1.128 | 0.88 | |
| 25_H | 81_L | 1.127 | 0.88 | |
| 246_T | 253_K | 1.124 | 0.87 | |
| 92_A | 106_A | 1.12 | 0.87 | |
| 2_A | 20_V | 1.117 | 0.87 | |
| 119_G | 122_A | 1.112 | 0.87 | |
| 264_D | 270_R | 1.11 | 0.86 | |
| 140_T | 161_Y | 1.107 | 0.86 | |
| 108_K | 196_G | 1.105 | 0.86 | |
| 41_G | 54_I | 1.094 | 0.85 | |
| 220_V | 224_A | 1.089 | 0.85 | |
| 110_L | 126_P | 1.086 | 0.85 | |
| 78_V | 94_V | 1.085 | 0.85 | |
| 51_T | 54_I | 1.074 | 0.84 | |
| 10_S | 13_R | 1.067 | 0.83 | |
| 260_N | 264_D | 1.051 | 0.82 | |
| 145_E | 151_G | 1.034 | 0.81 | |
| 92_A | 110_L | 1.028 | 0.80 | |
| 53_H | 217_R | 1.021 | 0.79 | |
| 120_V | 130_L | 1.01 | 0.78 | |
| 89_A | 195_V | 1.01 | 0.78 | |
| 107_P | 142_H | 1.008 | 0.78 | |
| 117_Q | 123_A | 1.007 | 0.78 | |
| 171_Y | 185_E | 1.004 | 0.78 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4kixC | 1 | 0.9963 | 100 | 0.035 | Contact Map | 0.653 |
| 3j3wC | 1 | 1 | 100 | 0.035 | Contact Map | 0.595 |
| 3v2dD | 1 | 1 | 100 | 0.041 | Contact Map | 0.706 |
| 3bboE | 1 | 0.9707 | 100 | 0.065 | Contact Map | 0.284 |
| 3j21B | 1 | 0.8132 | 100 | 0.31 | Contact Map | 0.635 |
| 1vq8A | 1 | 0.8205 | 100 | 0.314 | Contact Map | 0.653 |
| 3j3bA | 1 | 0.8718 | 100 | 0.329 | Contact Map | 0.598 |
| 4bynA | 1 | 0.8425 | 100 | 0.331 | Contact Map | 0.645 |
| 3iz5B | 1 | 0.8718 | 100 | 0.332 | Contact Map | 0.552 |
| 3zf7e | 1 | 0.8791 | 100 | 0.334 | Contact Map | 0.628 |
Sequence Conservation (Image Generated using WebLogo v3)