May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RDGB - YFCE
UniProt: P52061 - P67095
Length: 381
Sequences: 229
Seq/Len: 0.65
I_Prob: 0.00

RDGB - dITP/XTP pyrophosphatase
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RDGB
YFCE - Phosphodiesterase YfcE
Paralog alert: 0.27 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YFCE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_S 97_E 1.22 0.00
168_T 177_I 1.21 0.00
120_C 74_C 1.19 0.00
54_A 150_P 1.16 0.00
91_E 74_C 1.16 0.00
184_G 140_F 1.14 0.00
61_T 137_G 1.14 0.00
30_A 173_D 1.11 0.00
57_A 158_Y 1.10 0.00
73_A 130_L 1.09 0.00
123_V 91_W 1.07 0.00
8_T 97_E 1.04 0.00
50_A 150_P 1.03 0.00
30_A 2_M 1.03 0.00
15_R 22_E 1.02 0.00
106_M 137_G 1.01 0.00
120_C 134_E 1.00 0.00
88_Y 69_A 0.99 0.00
6_L 39_L 0.99 0.00
28_I 39_L 0.99 0.00
118_F 5_M 0.98 0.00
26_L 174_Q 0.97 0.00
64_P 101_L 0.97 0.00
86_A 128_T 0.97 0.00
22_S 4_L 0.96 0.00
148_P 131_P 0.96 0.00
32_T 94_V 0.95 0.00
169_A 124_V 0.95 0.00
140_W 171_L 0.95 0.00
28_I 30_Q 0.95 0.00
78_G 137_G 0.94 0.00
139_S 160_M 0.93 0.00
184_G 142_F 0.93 0.00
145_T 130_L 0.93 0.00
42_T 128_T 0.93 0.00
20_L 177_I 0.93 0.00
140_W 124_V 0.93 0.00
58_A 10_I 0.92 0.00
4_V 149_I 0.91 0.00
92_D 158_Y 0.90 0.00
61_T 21_L 0.90 0.00
171_E 163_N 0.90 0.00
65_A 39_L 0.90 0.00
93_A 131_P 0.89 0.00
67_A 12_G 0.89 0.00
38_S 59_R 0.89 0.00
74_V 102_F 0.88 0.00
23_D 153_G 0.88 0.00
166_G 95_L 0.88 0.00
106_M 100_R 0.88 0.00
11_V 138_E 0.88 0.00
78_G 164_D 0.87 0.00
58_A 161_L 0.87 0.00
43_G 107_H 0.86 0.00
14_V 17_T 0.85 0.00
14_V 173_D 0.85 0.00
65_A 5_M 0.85 0.00
88_Y 125_Y 0.84 0.00
16_E 53_P 0.84 0.00
56_H 5_M 0.84 0.00
65_A 38_V 0.84 0.00
44_L 84_H 0.84 0.00
123_V 125_Y 0.84 0.00
14_V 131_P 0.83 0.00
148_P 28_G 0.83 0.00
27_D 15_P 0.83 0.00
55_R 19_R 0.82 0.00
161_F 100_R 0.82 0.00
161_F 167_S 0.82 0.00
57_A 125_Y 0.82 0.00
147_E 121_D 0.81 0.00
125_L 86_P 0.81 0.00
102_L 152_G 0.81 0.00
159_I 29_A 0.81 0.00
29_V 35_L 0.81 0.00
58_A 4_L 0.81 0.00
28_I 6_F 0.80 0.00
83_I 69_A 0.80 0.00
121_V 85_F 0.80 0.00
94_T 131_P 0.80 0.00
122_L 30_Q 0.80 0.00
28_I 23_L 0.80 0.00
30_A 123_L 0.80 0.00
172_L 164_D 0.80 0.00
171_E 137_G 0.80 0.00
18_A 26_Q 0.80 0.00
26_L 66_K 0.79 0.00
6_L 53_P 0.79 0.00
169_A 156_A 0.79 0.00
80_A 109_F 0.79 0.00
40_E 153_G 0.79 0.00
77_L 120_N 0.79 0.00
43_G 70_V 0.79 0.00
164_S 166_L 0.79 0.00
35_G 157_S 0.79 0.00
145_T 147_V 0.78 0.00
89_S 149_I 0.78 0.00
117_R 94_V 0.78 0.00
145_T 158_Y 0.77 0.00
106_M 177_I 0.77 0.00
106_M 172_N 0.77 0.00
36_V 96_L 0.76 0.00
121_V 138_E 0.76 0.00
180_I 110_G 0.76 0.00
178_S 29_A 0.76 0.00
75_D 150_P 0.76 0.00
4_V 117_L 0.76 0.00
21_L 21_L 0.76 0.00
21_L 117_L 0.76 0.00
6_L 38_V 0.76 0.00
189_L 101_L 0.75 0.00
48_E 85_F 0.75 0.00
68_D 73_N 0.75 0.00
159_I 55_K 0.75 0.00
176_E 54_A 0.75 0.00
119_H 108_L 0.75 0.00
25_G 158_Y 0.75 0.00
175_E 137_G 0.75 0.00
193_A 139_I 0.75 0.00
78_G 121_D 0.75 0.00
59_K 122_V 0.75 0.00
189_L 153_G 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0477 seconds.