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OPENSEQ.org

TUSC - YCHN
UniProt: P45531 - P0AB52
Length: 236
Sequences: 226
Seq/Len: 0.97
I_Prob: 0.01

TUSC - Protein TusC
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TUSC
YCHN - Protein YchN
Paralog alert: 0.62 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TUSD YCHN
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2d1pADG:BEH:ADG:BEH:CIF:CIFContact Map
2hy5A:B:B:A:C:CContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
67_L 76_K 1.46 0.01
82_S 73_V 1.42 0.01
6_F 95_G 1.40 0.01
29_S 105_A 1.39 0.01
71_Y 75_V 1.35 0.01
21_G 4_I 1.32 0.01
31_L 17_S 1.30 0.01
31_L 77_L 1.26 0.01
117_L 23_R 1.25 0.01
9_S 49_G 1.24 0.01
86_R 117_F 1.22 0.01
14_G 89_T 1.19 0.01
7_V 39_L 1.19 0.01
13_H 13_Y 1.18 0.01
29_S 117_F 1.17 0.01
73_I 26_I 1.17 0.01
60_D 111_A 1.16 0.01
41_A 22_L 1.16 0.00
15_T 17_S 1.15 0.00
20_E 84_G 1.14 0.00
30_A 80_T 1.13 0.00
33_D 105_A 1.12 0.00
5_A 56_G 1.10 0.00
63_A 76_K 1.09 0.00
31_L 102_V 1.08 0.00
19_R 83_D 1.07 0.00
21_G 14_G 1.05 0.00
44_V 52_G 1.04 0.00
26_L 81_C 1.03 0.00
32_T 105_A 1.03 0.00
41_A 5_V 1.02 0.00
99_T 82_T 1.01 0.00
23_D 10_G 1.01 0.00
72_D 75_V 1.01 0.00
114_D 77_L 1.01 0.00
39_F 91_P 1.00 0.00
58_A 98_I 0.98 0.00
9_S 2_Q 0.97 0.00
36_A 107_W 0.96 0.00
63_A 32_E 0.96 0.00
10_T 114_V 0.96 0.00
13_H 55_P 0.96 0.00
81_A 71_Q 0.95 0.00
61_Y 79_K 0.95 0.00
77_W 30_E 0.95 0.00
43_G 45_A 0.94 0.00
55_A 29_R 0.94 0.00
114_D 83_D 0.94 0.00
27_A 107_W 0.94 0.00
83_L 81_C 0.94 0.00
7_V 95_G 0.94 0.00
23_D 59_Y 0.93 0.00
19_R 59_Y 0.93 0.00
46_Q 17_S 0.93 0.00
50_G 115_L 0.93 0.00
74_E 87_I 0.93 0.00
44_V 115_L 0.92 0.00
48_L 97_E 0.92 0.00
31_L 9_N 0.92 0.00
61_Y 15_S 0.92 0.00
66_K 47_T 0.91 0.00
101_L 67_I 0.91 0.00
103_A 83_D 0.90 0.00
101_L 29_R 0.90 0.00
28_T 5_V 0.90 0.00
51_Q 25_A 0.90 0.00
116_I 67_I 0.90 0.00
39_F 37_L 0.90 0.00
13_H 83_D 0.89 0.00
112_N 30_E 0.89 0.00
59_R 79_K 0.89 0.00
48_L 23_R 0.88 0.00
118_R 7_V 0.88 0.00
25_L 23_R 0.88 0.00
21_G 111_A 0.88 0.00
89_D 67_I 0.87 0.00
80_A 71_Q 0.87 0.00
109_E 71_Q 0.87 0.00
116_I 5_V 0.87 0.00
80_A 115_L 0.87 0.00
4_I 7_V 0.87 0.00
74_E 83_D 0.87 0.00
50_G 50_L 0.86 0.00
69_G 17_S 0.86 0.00
95_V 115_L 0.86 0.00
40_I 113_K 0.86 0.00
67_L 38_R 0.85 0.00
38_F 59_Y 0.85 0.00
46_Q 77_L 0.85 0.00
93_P 22_L 0.85 0.00
51_Q 55_P 0.85 0.00
119_F 41_L 0.85 0.00
48_L 87_I 0.85 0.00
46_Q 99_G 0.85 0.00
73_I 64_M 0.85 0.00
61_Y 116_T 0.84 0.00
6_F 49_G 0.84 0.00
33_D 96_V 0.84 0.00
117_L 69_T 0.84 0.00
90_P 70_A 0.84 0.00
25_L 38_R 0.84 0.00
13_H 39_L 0.84 0.00
7_V 73_V 0.84 0.00
119_F 96_V 0.84 0.00
68_L 115_L 0.83 0.00
85_E 72_N 0.83 0.00
24_A 109_L 0.83 0.00
101_L 52_G 0.83 0.00
119_F 91_P 0.83 0.00
25_L 22_L 0.83 0.00
78_V 115_L 0.83 0.00
1_M 59_Y 0.83 0.00
51_Q 6_I 0.82 0.00
2_K 62_Q 0.82 0.00
19_R 14_G 0.82 0.00
18_G 10_G 0.82 0.00
36_A 80_T 0.82 0.00
55_A 44_D 0.82 0.00
15_T 31_Q 0.82 0.00
58_A 116_T 0.82 0.00
70_L 14_G 0.82 0.00
11_A 114_V 0.82 0.00
41_A 116_T 0.81 0.00
23_D 109_L 0.81 0.00
53_P 11_A 0.81 0.00
53_P 79_K 0.81 0.00
74_E 8_A 0.81 0.00
74_E 71_Q 0.81 0.00
46_Q 42_M 0.81 0.00
88_L 62_Q 0.81 0.00
118_R 25_A 0.81 0.00
50_G 72_N 0.81 0.00
24_A 28_L 0.81 0.00
42_D 84_G 0.80 0.00
47_L 52_G 0.80 0.00
73_I 60_N 0.80 0.00
37_V 82_T 0.79 0.00
6_F 109_L 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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