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OPENSEQ.org
YIAM - YIAO
UniProt: P37674 - P37676
Length: 485
Sequences: 2259
Seq/Len: 5.04
I_Prob: 0.56
YIAM - 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM
Paralog alert: 0.59 [within 20: 0.06] - ratio of genomes with paralogs
Cluster includes: YIAM 		YIAO - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO
Paralog alert: 0.60 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: YIAO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
33_S 186_N 1.32 0.56
109_D 73_Q 0.82 0.14
45_F 72_A 0.78 0.12
109_D 80_R 0.77 0.11
109_D 77_S 0.74 0.10
109_D 97_L 0.70 0.08
28_Y 205_D 0.67 0.07
63_V 187_P 0.66 0.07
115_G 238_V 0.66 0.07
23_N 200_E 0.66 0.07
105_Q 80_R 0.63 0.06
18_C 164_K 0.63 0.06
46_V 109_L 0.61 0.05
15_V 297_A 0.60 0.05
31_Q 186_N 0.59 0.05
31_Q 167_K 0.59 0.05
126_L 180_F 0.59 0.05
45_F 148_R 0.57 0.04
105_Q 243_A 0.57 0.04
65_V 90_G 0.56 0.04
41_S 201_T 0.56 0.04
49_T 55_T 0.55 0.04
125_C 65_P 0.55 0.04
129_S 201_T 0.55 0.04
58_M 44_A 0.54 0.04
129_S 216_S 0.53 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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