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OPENSEQ.org

HYBD - HYBF
UniProt: P37182 - P0A703
Length: 277
Sequences: 327
Seq/Len: 1.21
I_Prob: 0.04

HYBD - Hydrogenase 2 maturation protease
Paralog alert: 0.59 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: HYAD HYBD HYCI
HYBF - Probable hydrogenase nickel incorporation protein HybF
Paralog alert: 0.48 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: HYBF HYPA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
38_I 33_I 1.47 0.04
3_I 6_L 1.45 0.04
58_L 53_H 1.19 0.02
129_G 62_L 1.12 0.01
105_R 4_L 1.12 0.01
46_M 33_I 1.07 0.01
64_I 52_C 1.07 0.01
71_P 21_H 1.04 0.01
37_E 6_L 1.03 0.01
157_I 91_L 1.03 0.01
114_L 108_K 1.01 0.01
116_L 65_V 1.01 0.01
140_P 65_V 1.00 0.01
90_I 47_S 1.00 0.01
88_N 107_V 1.00 0.01
78_R 82_I 0.96 0.01
39_L 24_K 0.96 0.01
92_P 43_A 0.95 0.01
144_Q 107_V 0.94 0.01
77_L 5_S 0.94 0.01
26_L 109_S 0.94 0.01
3_I 37_S 0.94 0.01
26_L 22_D 0.93 0.01
5_V 19_E 0.92 0.01
119_V 49_E 0.90 0.01
113_K 13_I 0.89 0.01
142_L 44_V 0.88 0.01
133_T 58_Q 0.88 0.01
35_Y 29_V 0.87 0.01
55_R 44_V 0.86 0.01
86_F 14_I 0.85 0.01
122_E 103_D 0.85 0.01
46_M 6_L 0.85 0.01
35_Y 42_S 0.85 0.01
107_T 12_E 0.84 0.01
125_E 83_H 0.83 0.01
94_Q 6_L 0.83 0.01
68_K 36_L 0.83 0.01
103_A 67_K 0.83 0.01
59_I 59_G 0.82 0.01
25_A 68_P 0.82 0.01
143_E 105_L 0.82 0.01
1_M 14_I 0.80 0.01
31_I 11_V 0.80 0.01
115_T 6_L 0.80 0.01
23_V 41_E 0.80 0.01
56_D 15_Q 0.80 0.01
143_E 110_I 0.79 0.01
33_P 49_E 0.78 0.01
105_R 37_S 0.78 0.01
36_V 54_G 0.78 0.01
5_V 9_S 0.78 0.01
104_L 27_T 0.78 0.01
151_E 84_Q 0.78 0.01
55_R 38_C 0.77 0.01
18_I 39_V 0.77 0.01
98_A 57_A 0.77 0.01
39_L 65_V 0.77 0.01
129_G 64_I 0.77 0.01
12_L 9_S 0.77 0.01
123_S 70_Q 0.77 0.01
74_M 14_I 0.76 0.01
56_D 91_L 0.76 0.01
90_I 39_V 0.76 0.00
149_L 25_R 0.76 0.00
100_V 57_A 0.76 0.00
40_D 111_E 0.75 0.00
140_P 5_S 0.75 0.00
135_E 62_L 0.75 0.00
121_P 27_T 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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