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OPENSEQ.org

HOLB - YCFH
UniProt: P28631 - P0AFQ7
Length: 599
Sequences: 465
Seq/Len: 0.80
I_Prob: 0.00

HOLB - DNA polymerase III subunit delta'
Paralog alert: 0.69 [within 20: 0.07] - ratio of genomes with paralogs
Cluster includes: HOLB
YCFH - Uncharacterized deoxyribonuclease YcfH
Paralog alert: 0.46 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: TATD YCFH YJJV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
306_I 195_V 1.49 0.00
121_T 210_A 1.39 0.00
48_L 153_V 1.17 0.00
22_R 156_C 1.15 0.00
45_S 33_D 1.14 0.00
164_L 125_K 1.13 0.00
151_L 214_H 1.10 0.00
141_F 12_G 1.07 0.00
46_R 140_A 1.07 0.00
125_A 185_A 1.06 0.00
116_D 112_S 1.05 0.00
131_T 171_G 1.05 0.00
111_V 78_E 1.04 0.00
109_A 142_L 1.04 0.00
66_Q 18_L 1.03 0.00
231_S 30_A 1.03 0.00
93_V 208_Y 1.03 0.00
90_V 220_Q 1.02 0.00
92_A 70_N 1.02 0.00
112_V 177_S 1.01 0.00
228_D 3_L 1.01 0.00
59_C 152_G 1.01 0.00
273_L 40_V 1.01 0.00
165_A 202_V 1.01 0.00
6_W 38_L 1.00 0.00
278_A 198_D 1.00 0.00
88_L 185_A 1.00 0.00
110_K 112_S 0.99 0.00
79_L 168_L 0.99 0.00
114_V 143_R 0.99 0.00
85_K 171_G 0.98 0.00
167_P 159_E 0.97 0.00
203_A 84_A 0.97 0.00
25_H 154_L 0.96 0.00
117_A 143_R 0.96 0.00
105_R 13_L 0.96 0.00
105_R 159_E 0.96 0.00
313_T 64_C 0.95 0.00
27_L 44_L 0.95 0.00
233_L 4_V 0.94 0.00
40_L 250_F 0.94 0.00
73_H 157_F 0.94 0.00
198_P 38_L 0.93 0.00
51_Q 108_R 0.93 0.00
167_P 177_S 0.93 0.00
171_Y 200_L 0.93 0.00
59_C 209_L 0.92 0.00
93_V 89_V 0.92 0.00
32_L 30_A 0.92 0.00
263_A 238_A 0.92 0.00
22_R 210_A 0.91 0.00
149_E 198_D 0.91 0.00
164_L 39_A 0.91 0.00
139_T 206_S 0.91 0.00
275_A 58_D 0.91 0.00
136_P 26_L 0.90 0.00
254_D 147_V 0.90 0.00
203_A 122_E 0.89 0.00
310_L 152_G 0.88 0.00
255_A 64_C 0.88 0.00
319_I 116_H 0.88 0.00
104_A 175_S 0.87 0.00
265_V 180_V 0.87 0.00
21_G 214_H 0.86 0.00
309_E 171_G 0.86 0.00
89_G 88_G 0.86 0.00
236_L 117_I 0.85 0.00
50_C 209_L 0.85 0.00
290_L 42_T 0.85 0.00
124_A 194_Y 0.85 0.00
136_P 25_V 0.85 0.00
22_R 53_L 0.85 0.00
193_L 125_K 0.85 0.00
293_V 162_E 0.84 0.00
67_L 223_M 0.84 0.00
132_L 246_T 0.84 0.00
297_R 240_E 0.84 0.00
125_A 227_V 0.84 0.00
29_I 102_T 0.84 0.00
213_R 92_L 0.83 0.00
124_A 214_H 0.83 0.00
124_A 61_V 0.83 0.00
107_G 242_L 0.83 0.00
151_L 56_E 0.83 0.00
293_V 168_L 0.83 0.00
190_A 15_Y 0.82 0.00
139_T 91_A 0.82 0.00
114_V 241_E 0.82 0.00
113_W 107_V 0.82 0.00
132_L 200_L 0.82 0.00
291_G 242_L 0.82 0.00
168_P 133_D 0.82 0.00
150_R 22_V 0.81 0.00
91_D 141_I 0.81 0.00
62_C 152_G 0.81 0.00
79_L 129_V 0.81 0.00
53_P 110_Q 0.81 0.00
90_V 111_E 0.81 0.00
141_F 230_Y 0.81 0.00
114_V 110_Q 0.81 0.00
7_L 133_D 0.80 0.00
90_V 60_V 0.80 0.00
205_F 122_E 0.80 0.00
232_L 87_E 0.80 0.00
301_M 190_D 0.80 0.00
217_C 176_F 0.80 0.00
89_G 43_T 0.80 0.00
295_H 58_D 0.80 0.00
175_W 38_L 0.80 0.00
277_L 114_I 0.80 0.00
114_V 63_S 0.79 0.00
310_L 191_A 0.79 0.00
313_T 176_F 0.79 0.00
31_A 15_Y 0.79 0.00
191_L 38_L 0.79 0.00
297_R 243_A 0.79 0.00
111_V 189_R 0.79 0.00
69_Q 200_L 0.79 0.00
124_A 27_A 0.79 0.00
123_A 169_D 0.79 0.00
54_Q 25_V 0.79 0.00
238_H 88_G 0.79 0.00
90_V 242_L 0.79 0.00
211_Q 85_A 0.78 0.00
170_Q 90_V 0.78 0.00
142_F 174_I 0.78 0.00
25_H 201_L 0.78 0.00
120_L 91_A 0.78 0.00
73_H 221_P 0.78 0.00
7_L 46_G 0.78 0.00
40_L 11_D 0.78 0.00
51_Q 21_D 0.78 0.00
141_F 163_T 0.77 0.00
110_K 4_V 0.77 0.00
112_V 170_L 0.77 0.00
27_L 119_I 0.77 0.00
301_M 242_L 0.77 0.00
175_W 177_S 0.77 0.00
112_V 6_S 0.77 0.00
14_L 224_V 0.77 0.00
167_P 138_T 0.77 0.00
170_Q 52_D 0.76 0.00
251_L 187_Q 0.76 0.00
97_T 4_V 0.76 0.00
67_L 38_L 0.76 0.00
94_R 138_T 0.76 0.00
104_A 27_A 0.76 0.00
204_L 157_F 0.76 0.00
151_L 227_V 0.76 0.00
71_G 188_L 0.76 0.00
312_I 197_L 0.76 0.00
89_G 123_L 0.76 0.00
149_E 37_C 0.76 0.00
91_D 118_Q 0.76 0.00
40_L 8_C 0.76 0.00
240_Q 255_H 0.75 0.00
141_F 39_A 0.75 0.00
121_T 40_V 0.75 0.00
232_L 226_D 0.75 0.00
177_S 239_V 0.75 0.00
93_V 128_I 0.75 0.00
27_L 77_V 0.75 0.00
50_C 152_G 0.75 0.00
131_T 66_V 0.75 0.00
190_A 72_N 0.75 0.00
79_L 252_R 0.74 0.00
93_V 57_R 0.74 0.00
307_N 227_V 0.74 0.00
313_T 100_Y 0.74 0.00
44_L 147_V 0.74 0.00
98_E 133_D 0.74 0.00
177_S 235_K 0.74 0.00
303_V 13_L 0.74 0.00
197_S 40_V 0.74 0.00
94_R 6_S 0.74 0.00
224_V 89_V 0.74 0.00
201_A 80_L 0.74 0.00
79_L 128_I 0.74 0.00
275_A 78_E 0.74 0.00
58_S 227_V 0.74 0.00
176_L 60_V 0.74 0.00
155_L 162_E 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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