May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
LPXD - UPPS
UniProt: P21645 - P60472
Length: 594
Sequences: 353
Seq/Len: 0.62
I_Prob: 0.00
LPXD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
Paralog alert: 0.09 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: LPXD 		UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
196_P 29_G 1.57 0.00
306_P 29_G 1.53 0.00
196_P 39_R 1.46 0.00
157_N 124_I 1.26 0.00
220_L 120_L 1.25 0.00
130_L 105_V 1.23 0.00
284_T 212_A 1.20 0.00
306_P 39_R 1.17 0.00
35_Q 104_N 1.16 0.00
73_A 45_A 1.16 0.00
87_A 29_G 1.15 0.00
319_L 68_Y 1.15 0.00
265_C 150_D 1.11 0.00
87_A 39_R 1.11 0.00
198_I 181_V 1.09 0.00
253_V 23_I 1.09 0.00
219_A 86_M 1.08 0.00
63_Q 104_N 1.07 0.00
330_L 226_E 1.07 0.00
83_Y 68_Y 1.06 0.00
283_V 68_Y 1.06 0.00
46_K 233_L 1.05 0.00
190_G 144_N 1.04 0.00
196_P 137_L 1.03 0.00
212_C 38_I 1.03 0.00
318_A 41_F 1.03 0.00
59_V 69_A 1.03 0.00
90_L 29_G 1.00 0.00
202_I 229_F 1.00 0.00
138_A 179_Q 0.99 0.00
192_W 69_A 0.98 0.00
256_A 189_V 0.97 0.00
264_Y 21_V 0.97 0.00
238_A 243_F 0.97 0.00
159_T 158_L 0.96 0.00
123_V 156_R 0.96 0.00
238_A 64_A 0.96 0.00
263_R 148_R 0.94 0.00
5_R 163_Q 0.94 0.00
231_I 139_L 0.94 0.00
277_M 156_R 0.94 0.00
99_N 38_I 0.94 0.00
234_Q 98_K 0.92 0.00
59_V 45_A 0.92 0.00
90_L 39_R 0.92 0.00
263_R 68_Y 0.91 0.00
235_C 120_L 0.91 0.00
252_G 205_L 0.90 0.00
112_L 132_A 0.89 0.00
14_D 128_E 0.89 0.00
192_W 150_D 0.89 0.00
221_D 104_N 0.88 0.00
100_I 236_F 0.88 0.00
235_C 229_F 0.88 0.00
87_A 116_F 0.88 0.00
181_D 236_F 0.88 0.00
28_V 223_D 0.87 0.00
160_I 126_K 0.87 0.00
144_K 37_K 0.87 0.00
212_C 35_Q 0.87 0.00
222_D 108_R 0.86 0.00
286_T 33_K 0.86 0.00
45_P 220_L 0.86 0.00
243_I 47_A 0.86 0.00
226_G 99_S 0.86 0.00
63_Q 62_I 0.86 0.00
175_G 35_Q 0.86 0.00
90_L 76_N 0.85 0.00
186_A 82_V 0.85 0.00
82_T 233_L 0.85 0.00
205_D 233_L 0.85 0.00
164_I 49_S 0.85 0.00
96_P 233_L 0.85 0.00
115_N 47_A 0.84 0.00
73_A 199_H 0.84 0.00
58_A 223_D 0.84 0.00
160_I 108_R 0.84 0.00
112_L 106_R 0.84 0.00
9_L 212_A 0.83 0.00
6_L 109_I 0.83 0.00
194_K 144_N 0.83 0.00
330_L 36_G 0.83 0.00
266_M 189_V 0.83 0.00
275_G 208_Q 0.83 0.00
284_T 177_L 0.83 0.00
130_L 171_Q 0.83 0.00
220_L 72_S 0.83 0.00
18_H 236_F 0.82 0.00
88_Q 29_G 0.82 0.00
128_V 109_I 0.82 0.00
273_I 139_L 0.82 0.00
142_V 114_S 0.82 0.00
66_L 54_V 0.82 0.00
81_L 139_L 0.82 0.00
238_A 209_I 0.82 0.00
256_A 236_F 0.82 0.00
193_V 162_V 0.82 0.00
117_S 21_V 0.82 0.00
131_G 36_G 0.82 0.00
315_K 113_T 0.82 0.00
268_G 189_V 0.81 0.00
256_A 56_F 0.81 0.00
138_A 180_H 0.81 0.00
118_I 21_V 0.81 0.00
242_V 227_Q 0.81 0.00
4_I 220_L 0.81 0.00
327_S 110_I 0.81 0.00
107_D 212_A 0.81 0.00
317_A 80_Q 0.81 0.00
39_I 167_L 0.80 0.00
185_Y 29_G 0.80 0.00
172_I 159_A 0.80 0.00
7_A 236_F 0.80 0.00
196_P 192_V 0.80 0.00
192_W 149_W 0.80 0.00
234_Q 214_L 0.80 0.00
142_V 52_R 0.79 0.00
62_T 82_V 0.79 0.00
230_I 144_N 0.79 0.00
138_A 48_K 0.79 0.00
230_I 37_K 0.79 0.00
112_L 129_A 0.79 0.00
188_D 50_V 0.79 0.00
273_I 233_L 0.79 0.00
8_D 196_G 0.79 0.00
117_S 54_V 0.79 0.00
160_I 214_L 0.79 0.00
249_V 68_Y 0.79 0.00
39_I 231_G 0.78 0.00
228_G 230_E 0.78 0.00
316_T 105_V 0.78 0.00
214_T 155_V 0.78 0.00
28_V 29_G 0.78 0.00
255_M 141_I 0.78 0.00
88_Q 55_S 0.78 0.00
185_Y 52_R 0.78 0.00
249_V 24_I 0.78 0.00
134_V 103_H 0.78 0.00
225_I 109_I 0.78 0.00
11_Q 178_N 0.78 0.00
235_C 139_L 0.78 0.00
192_W 246_T 0.78 0.00
146_S 106_R 0.78 0.00
106_I 236_F 0.78 0.00
253_V 209_I 0.78 0.00
151_G 184_H 0.78 0.00
48_R 237_A 0.78 0.00
215_I 107_L 0.78 0.00
285_V 119_R 0.77 0.00
158_V 50_V 0.77 0.00
321_M 114_S 0.77 0.00
278_E 160_E 0.77 0.00
162_H 24_I 0.77 0.00
25_I 105_V 0.77 0.00
298_P 196_G 0.77 0.00
25_I 109_I 0.77 0.00
260_K 178_N 0.77 0.00
148_I 158_L 0.77 0.00
64_D 173_D 0.76 0.00
28_V 39_R 0.76 0.00
169_N 156_R 0.76 0.00
230_I 198_E 0.76 0.00
87_A 53_A 0.76 0.00
152_S 92_A 0.76 0.00
315_K 176_M 0.76 0.00
265_C 149_W 0.76 0.00
122_A 57_A 0.75 0.00
222_D 113_T 0.75 0.00
204_G 143_A 0.75 0.00
137_G 236_F 0.75 0.00
15_A 21_V 0.75 0.00
292_M 68_Y 0.75 0.00
43_V 68_Y 0.75 0.00
37_G 186_L 0.75 0.00
285_V 199_H 0.75 0.00
320_V 220_L 0.75 0.00
25_I 143_A 0.75 0.00
253_V 247_E 0.74 0.00
303_S 45_A 0.74 0.00
247_T 54_V 0.74 0.00
231_I 120_L 0.74 0.00
193_V 29_G 0.74 0.00
222_D 128_E 0.74 0.00
159_T 177_L 0.74 0.00
48_R 158_L 0.74 0.00
84_A 82_V 0.74 0.00
38_H 45_A 0.74 0.00
94_P 23_I 0.74 0.00
142_V 138_T 0.73 0.00
64_D 114_S 0.73 0.00
203_I 105_V 0.73 0.00
282_K 47_A 0.73 0.00
263_R 92_A 0.73 0.00
102_P 129_A 0.73 0.00
228_G 148_R 0.73 0.00
156_A 82_V 0.73 0.00
263_R 214_L 0.73 0.00
317_A 198_E 0.73 0.00
316_T 93_L 0.73 0.00
259_L 50_V 0.73 0.00
50_H 175_E 0.73 0.00
241_V 219_V 0.73 0.00
309_P 23_I 0.73 0.00
92_T 64_A 0.73 0.00
228_G 192_V 0.73 0.00
52_G 105_V 0.73 0.00
236_Q 86_M 0.73 0.00
30_S 177_L 0.72 0.00
118_I 18_C 0.72 0.00
262_G 69_A 0.72 0.00
128_V 230_E 0.72 0.00
110_A 55_S 0.72 0.00
38_H 170_D 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0646 seconds.