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OPENSEQ.org

RNH2 - UPPS
UniProt: P10442 - P60472
Length: 451
Sequences: 313
Seq/Len: 0.75
I_Prob: 0.00

RNH2 - Ribonuclease HII
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNH2
UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_Y 237_A 1.33 0.00
23_L 67_L 1.27 0.00
18_V 192_V 1.22 0.00
161_Q 156_R 1.22 0.00
110_N 89_F 1.20 0.00
26_A 92_A 1.16 0.00
63_E 132_A 1.15 0.00
82_N 216_F 1.14 0.00
40_I 47_A 1.08 0.00
153_V 171_Q 1.08 0.00
194_L 115_R 1.08 0.00
157_Y 137_L 1.07 0.00
75_P 226_E 1.07 0.00
107_I 240_E 1.06 0.00
175_A 136_G 1.06 0.00
166_P 105_V 1.05 0.00
36_P 116_F 1.05 0.00
174_L 139_L 1.03 0.00
93_R 147_G 1.03 0.00
109_G 89_F 1.03 0.00
122_V 185_E 1.02 0.00
58_Y 48_K 1.02 0.00
177_H 183_M 1.01 0.00
18_V 167_L 1.00 0.00
78_I 201_I 1.00 0.00
131_E 214_L 0.99 0.00
181_E 181_V 0.99 0.00
174_L 231_G 0.98 0.00
191_K 217_T 0.98 0.00
50_S 225_D 0.98 0.00
107_I 180_H 0.97 0.00
105_V 83_S 0.97 0.00
13_A 167_L 0.96 0.00
49_L 85_L 0.96 0.00
180_T 154_G 0.95 0.00
137_I 51_R 0.95 0.00
43_L 93_L 0.95 0.00
40_I 72_S 0.95 0.00
161_Q 236_F 0.94 0.00
33_I 139_L 0.94 0.00
51_E 212_A 0.93 0.00
113_P 216_F 0.93 0.00
12_V 183_M 0.93 0.00
188_G 245_G 0.93 0.00
188_G 92_A 0.92 0.00
128_R 108_R 0.92 0.00
158_G 201_I 0.91 0.00
93_R 149_W 0.91 0.00
35_D 144_N 0.91 0.00
127_S 24_I 0.90 0.00
146_E 201_I 0.90 0.00
187_F 151_I 0.90 0.00
71_G 47_A 0.90 0.00
179_A 136_G 0.89 0.00
71_G 37_K 0.89 0.00
62_K 126_K 0.89 0.00
39_P 72_S 0.88 0.00
29_T 37_K 0.88 0.00
159_F 98_K 0.88 0.00
152_I 173_D 0.88 0.00
85_H 52_R 0.87 0.00
168_A 36_G 0.87 0.00
187_F 214_L 0.87 0.00
92_Q 125_R 0.87 0.00
180_T 57_A 0.87 0.00
112_C 196_G 0.87 0.00
123_V 128_E 0.86 0.00
89_L 72_S 0.86 0.00
11_L 118_S 0.86 0.00
138_L 205_L 0.86 0.00
50_S 219_V 0.85 0.00
80_E 173_D 0.85 0.00
105_V 54_V 0.85 0.00
154_F 233_L 0.85 0.00
107_I 125_R 0.85 0.00
58_Y 148_R 0.85 0.00
71_G 95_S 0.85 0.00
168_A 19_R 0.85 0.00
129_V 150_D 0.84 0.00
83_I 75_W 0.84 0.00
29_T 198_E 0.84 0.00
124_K 21_V 0.84 0.00
185_R 169_P 0.84 0.00
113_P 72_S 0.84 0.00
130_P 245_G 0.84 0.00
173_K 61_G 0.84 0.00
180_T 229_F 0.83 0.00
117_M 115_R 0.83 0.00
70_L 205_L 0.83 0.00
154_F 217_T 0.83 0.00
52_K 189_V 0.83 0.00
109_G 150_D 0.83 0.00
55_L 40_A 0.83 0.00
117_M 212_A 0.83 0.00
69_S 130_L 0.82 0.00
138_L 181_V 0.82 0.00
159_F 174_E 0.82 0.00
127_S 125_R 0.82 0.00
157_Y 105_V 0.82 0.00
146_E 120_L 0.82 0.00
131_E 104_N 0.82 0.00
96_A 225_D 0.82 0.00
77_E 149_W 0.81 0.00
122_V 29_G 0.81 0.00
12_V 167_L 0.81 0.00
77_E 93_L 0.81 0.00
13_A 140_N 0.81 0.00
172_E 163_Q 0.81 0.00
181_E 53_A 0.81 0.00
37_A 205_L 0.81 0.00
68_W 181_V 0.81 0.00
85_H 113_T 0.80 0.00
36_P 89_F 0.80 0.00
56_A 87_E 0.79 0.00
12_V 102_R 0.79 0.00
73_A 40_A 0.79 0.00
49_L 35_Q 0.79 0.00
128_R 34_K 0.79 0.00
172_E 129_A 0.79 0.00
74_E 231_G 0.79 0.00
102_P 103_H 0.79 0.00
27_V 128_E 0.79 0.00
112_C 103_H 0.78 0.00
73_A 105_V 0.78 0.00
155_P 191_L 0.78 0.00
192_R 136_G 0.78 0.00
123_V 169_P 0.78 0.00
90_A 215_Y 0.78 0.00
61_I 210_A 0.78 0.00
89_L 205_L 0.78 0.00
163_K 212_A 0.78 0.00
85_H 110_I 0.78 0.00
87_T 90_V 0.77 0.00
160_A 102_R 0.77 0.00
23_L 50_V 0.77 0.00
176_E 214_L 0.77 0.00
103_E 136_G 0.77 0.00
65_A 210_A 0.77 0.00
157_Y 65_L 0.77 0.00
183_H 108_R 0.77 0.00
168_A 168_Q 0.77 0.00
27_V 216_F 0.76 0.00
154_F 141_I 0.76 0.00
159_F 59_N 0.76 0.00
145_A 176_M 0.76 0.00
35_D 72_S 0.76 0.00
12_V 132_A 0.76 0.00
84_L 150_D 0.76 0.00
73_A 99_S 0.76 0.00
188_G 123_R 0.76 0.00
168_A 60_N 0.76 0.00
58_Y 122_E 0.76 0.00
31_A 54_V 0.76 0.00
80_E 35_Q 0.76 0.00
13_A 64_A 0.76 0.00
152_I 135_T 0.75 0.00
103_E 119_R 0.75 0.00
70_L 101_H 0.75 0.00
176_E 231_G 0.75 0.00
160_A 59_N 0.75 0.00
138_L 247_E 0.75 0.00
110_N 96_E 0.75 0.00
87_T 144_N 0.75 0.00
99_H 188_P 0.75 0.00
37_A 129_A 0.75 0.00
149_A 129_A 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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