May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RSME - YGGW
UniProt: P0AGL7 - P52062
Length: 621
Sequences: 414
Seq/Len: 0.68
I_Prob: 0.01

RSME - Ribosomal RNA small subunit methyltransferase E
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSME
YGGW - Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW
Paralog alert: 0.56 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: HEMN YGGW
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
87_S 157_L 1.60 0.01
140_E 201_N 1.48 0.01
236_Q 70_S 1.30 0.00
40_L 356_D 1.25 0.00
224_T 157_L 1.25 0.00
101_E 371_L 1.23 0.00
116_G 153_S 1.19 0.00
179_I 61_T 1.18 0.00
200_S 121_I 1.16 0.00
54_I 7_L 1.15 0.00
91_K 369_N 1.15 0.00
237_V 372_L 1.15 0.00
231_A 166_H 1.14 0.00
89_G 70_S 1.13 0.00
31_V 72_L 1.13 0.00
240_G 104_T 1.12 0.00
205_A 242_A 1.11 0.00
28_I 152_A 1.10 0.00
114_R 63_F 1.10 0.00
220_R 171_Q 1.10 0.00
228_A 224_G 1.09 0.00
153_A 162_L 1.08 0.00
228_A 121_I 1.07 0.00
92_M 103_G 1.07 0.00
87_S 161_N 1.05 0.00
112_S 98_M 1.04 0.00
228_A 269_G 1.04 0.00
159_W 145_A 1.04 0.00
100_I 70_S 1.03 0.00
234_A 76_A 1.01 0.00
82_L 207_R 1.00 0.00
138_A 72_L 1.00 0.00
27_H 61_T 0.99 0.00
115_C 43_L 0.99 0.00
64_V 57_R 0.98 0.00
80_I 363_H 0.98 0.00
96_I 91_A 0.98 0.00
140_E 269_G 0.98 0.00
232_I 123_I 0.98 0.00
140_E 200_P 0.97 0.00
220_R 369_N 0.96 0.00
173_P 360_I 0.96 0.00
44_D 200_P 0.96 0.00
241_D 127_S 0.96 0.00
92_M 161_N 0.95 0.00
225_E 137_G 0.95 0.00
228_A 100_A 0.95 0.00
220_R 316_F 0.95 0.00
80_I 42_H 0.94 0.00
192_L 212_P 0.94 0.00
107_I 371_L 0.94 0.00
92_M 157_L 0.94 0.00
228_A 176_A 0.93 0.00
199_L 365_K 0.93 0.00
235_L 323_P 0.93 0.00
86_M 248_C 0.92 0.00
172_H 165_M 0.92 0.00
83_G 366_L 0.92 0.00
31_V 360_I 0.92 0.00
131_W 113_Y 0.92 0.00
126_K 26_N 0.92 0.00
109_P 252_L 0.91 0.00
5_R 171_Q 0.91 0.00
212_F 179_D 0.91 0.00
101_E 360_I 0.91 0.00
32_L 261_I 0.91 0.00
101_E 204_F 0.90 0.00
83_G 218_W 0.90 0.00
176_S 233_Y 0.90 0.00
173_P 221_F 0.90 0.00
179_I 360_I 0.89 0.00
226_T 204_F 0.89 0.00
193_I 19_K 0.89 0.00
127_K 260_Y 0.89 0.00
144_R 239_S 0.89 0.00
137_A 70_S 0.89 0.00
100_I 242_A 0.89 0.00
230_T 19_K 0.88 0.00
91_K 238_T 0.88 0.00
87_S 197_T 0.88 0.00
6_I 161_N 0.88 0.00
228_A 265_C 0.88 0.00
104_V 269_G 0.88 0.00
115_C 161_N 0.88 0.00
239_F 198_I 0.88 0.00
100_I 371_L 0.87 0.00
226_T 164_L 0.87 0.00
85_V 142_P 0.87 0.00
37_G 293_G 0.87 0.00
193_I 29_A 0.86 0.00
24_A 265_C 0.86 0.00
122_E 243_K 0.86 0.00
233_T 375_F 0.86 0.00
150_I 152_A 0.86 0.00
173_P 283_K 0.85 0.00
241_D 27_S 0.85 0.00
60_K 329_A 0.85 0.00
75_E 312_F 0.85 0.00
42_L 185_E 0.85 0.00
59_K 63_F 0.85 0.00
242_L 63_F 0.84 0.00
92_M 27_S 0.84 0.00
130_Q 240_A 0.84 0.00
166_G 309_F 0.84 0.00
144_R 290_F 0.84 0.00
84_Q 104_T 0.84 0.00
119_L 193_W 0.84 0.00
98_K 260_Y 0.84 0.00
209_R 352_T 0.84 0.00
54_I 105_V 0.84 0.00
91_K 217_L 0.84 0.00
159_W 139_I 0.83 0.00
190_R 161_N 0.83 0.00
220_R 168_L 0.83 0.00
34_M 76_A 0.83 0.00
158_A 306_D 0.83 0.00
126_K 268_H 0.83 0.00
82_L 157_L 0.83 0.00
133_K 128_F 0.83 0.00
230_T 39_Y 0.83 0.00
99_S 136_L 0.83 0.00
173_P 368_L 0.82 0.00
195_P 250_H 0.82 0.00
225_E 316_F 0.82 0.00
6_I 70_S 0.82 0.00
40_L 200_P 0.82 0.00
92_M 139_I 0.82 0.00
89_G 371_L 0.82 0.00
241_D 161_N 0.82 0.00
130_Q 39_Y 0.82 0.00
241_D 19_K 0.81 0.00
175_A 350_Y 0.81 0.00
80_I 105_V 0.81 0.00
107_I 7_L 0.81 0.00
195_P 254_Y 0.81 0.00
97_Q 315_R 0.81 0.00
73_D 158_R 0.81 0.00
116_G 296_L 0.80 0.00
174_R 90_L 0.80 0.00
85_V 367_F 0.80 0.00
100_I 81_L 0.80 0.00
113_E 147_R 0.80 0.00
234_A 176_A 0.80 0.00
137_A 166_H 0.80 0.00
85_V 369_N 0.80 0.00
22_E 157_L 0.80 0.00
56_S 82_D 0.80 0.00
153_A 355_A 0.80 0.00
97_Q 372_L 0.79 0.00
235_L 351_L 0.79 0.00
189_V 173_L 0.79 0.00
40_L 198_I 0.79 0.00
119_L 314_N 0.79 0.00
136_I 368_L 0.79 0.00
53_E 40_V 0.79 0.00
89_G 11_I 0.79 0.00
131_W 28_H 0.79 0.00
130_Q 270_K 0.79 0.00
207_T 139_I 0.79 0.00
126_K 197_T 0.79 0.00
53_E 75_P 0.79 0.00
96_I 90_L 0.79 0.00
119_L 125_V 0.79 0.00
173_P 240_A 0.79 0.00
92_M 248_C 0.78 0.00
60_K 303_E 0.78 0.00
117_V 370_S 0.78 0.00
172_H 220_I 0.78 0.00
6_I 9_L 0.78 0.00
120_D 191_L 0.78 0.00
159_W 15_W 0.78 0.00
172_H 287_P 0.78 0.00
147_V 11_I 0.78 0.00
27_H 221_F 0.78 0.00
64_V 367_F 0.77 0.00
97_Q 375_F 0.77 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.6097 seconds.