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OPENSEQ.org

SRP54 - TRMD
UniProt: P0AGD7 - P0A873
Length: 708
Sequences: 777
Seq/Len: 1.12
I_Prob: 0.00

SRP54 - Signal recognition particle protein
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SRP54
TRMD - tRNA (guanine-N(1)-)-methyltransferase
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TRMD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
60_V 219_R 1.20 0.00
302_S 83_K 1.16 0.00
352_G 122_V 1.11 0.00
422_D 169_D 1.11 0.00
353_K 58_P 1.07 0.00
111_A 109_I 1.03 0.00
332_N 149_I 1.01 0.00
27_V 58_P 0.99 0.00
26_N 20_G 0.99 0.00
217_T 86_Y 0.97 0.00
307_I 63_M 0.96 0.00
370_D 168_E 0.94 0.00
280_E 169_D 0.94 0.00
268_K 156_I 0.94 0.00
411_Q 157_P 0.93 0.00
133_L 20_G 0.93 0.00
393_I 133_I 0.92 0.00
393_I 156_I 0.91 0.00
2_F 140_G 0.91 0.00
93_L 212_S 0.90 0.00
357_M 103_A 0.90 0.00
137_A 86_Y 0.89 0.00
105_M 180_H 0.89 0.00
105_M 144_P 0.88 0.00
371_K 200_N 0.87 0.00
208_V 177_D 0.87 0.00
375_R 111_V 0.85 0.00
373_L 61_L 0.84 0.00
334_F 187_L 0.84 0.00
100_P 161_G 0.84 0.00
57_E 136_Y 0.84 0.00
371_K 103_A 0.84 0.00
12_T 88_S 0.84 0.00
360_I 41_F 0.84 0.00
344_M 224_L 0.83 0.00
52_I 84_V 0.83 0.00
415_R 85_I 0.81 0.00
90_N 144_P 0.81 0.00
16_I 209_L 0.81 0.00
424_Q 61_L 0.81 0.00
105_M 94_L 0.81 0.00
27_V 15_A 0.81 0.00
69_T 16_I 0.80 0.00
216_E 130_E 0.80 0.00
203_D 148_L 0.80 0.00
296_G 183_R 0.80 0.00
86_M 177_D 0.79 0.00
201_M 100_S 0.79 0.00
290_I 114_R 0.79 0.00
419_Q 150_D 0.79 0.00
180_K 45_R 0.79 0.00
160_F 66_P 0.79 0.00
283_E 169_D 0.79 0.00
332_N 167_T 0.79 0.00
116_S 171_F 0.78 0.00
375_R 32_S 0.78 0.00
314_A 31_L 0.78 0.00
26_N 52_R 0.78 0.00
303_L 133_I 0.78 0.00
354_L 122_V 0.78 0.00
390_K 235_R 0.77 0.00
196_H 180_H 0.77 0.00
23_T 42_T 0.77 0.00
3_D 111_V 0.77 0.00
335_L 152_V 0.77 0.00
279_T 24_R 0.76 0.00
274_G 8_L 0.76 0.00
230_A 21_V 0.76 0.00
432_K 26_V 0.76 0.00
370_D 54_Y 0.76 0.00
223_A 212_S 0.76 0.00
177_K 204_I 0.76 0.00
34_V 90_Q 0.76 0.00
317_E 97_A 0.76 0.00
160_F 7_S 0.76 0.00
297_M 183_R 0.75 0.00
323_L 41_F 0.75 0.00
7_D 61_L 0.75 0.00
352_G 20_G 0.75 0.00
117_V 72_H 0.74 0.00
239_A 110_L 0.74 0.00
135_V 145_A 0.74 0.00
224_M 115_Y 0.73 0.00
249_K 115_Y 0.73 0.00
372_V 169_D 0.73 0.00
222_D 142_E 0.73 0.00
344_M 233_Q 0.73 0.00
197_V 129_E 0.73 0.00
343_N 133_I 0.72 0.00
10_S 114_R 0.72 0.00
350_L 210_K 0.72 0.00
338_L 185_E 0.72 0.00
422_D 202_A 0.72 0.00
223_A 99_V 0.72 0.00
111_A 17_T 0.71 0.00
118_G 45_R 0.71 0.00
283_E 7_S 0.71 0.00
58_K 144_P 0.71 0.00
17_S 163_E 0.71 0.00
410_V 97_A 0.71 0.00
176_L 73_A 0.71 0.00
26_N 162_H 0.71 0.00
183_F 110_L 0.71 0.00
315_Q 136_Y 0.71 0.00
397_S 103_A 0.71 0.00
368_M 24_R 0.71 0.00
370_D 178_C 0.71 0.00
321_S 200_N 0.71 0.00
122_K 136_Y 0.70 0.00
157_V 19_Y 0.70 0.00
410_V 168_E 0.70 0.00
248_T 102_L 0.70 0.00
55_V 71_I 0.70 0.00
406_C 85_I 0.70 0.00
417_L 149_I 0.70 0.00
343_N 224_L 0.70 0.00
205_I 150_D 0.69 0.00
262_I 66_P 0.69 0.00
341_M 47_R 0.69 0.00
23_T 233_Q 0.69 0.00
176_L 178_C 0.69 0.00
224_M 192_V 0.69 0.00
332_N 180_H 0.69 0.00
139_V 87_L 0.69 0.00
324_K 205_R 0.69 0.00
321_S 212_S 0.69 0.00
232_T 36_W 0.69 0.00
95_L 48_T 0.69 0.00
370_D 37_S 0.69 0.00
308_E 13_F 0.69 0.00
85_A 114_R 0.69 0.00
4_N 64_V 0.69 0.00
58_K 26_V 0.68 0.00
30_T 118_I 0.68 0.00
279_T 5_I 0.68 0.00
16_I 187_L 0.68 0.00
219_F 8_L 0.68 0.00
425_R 115_Y 0.68 0.00
16_I 23_G 0.68 0.00
170_D 211_Q 0.68 0.00
231_N 136_Y 0.68 0.00
39_L 187_L 0.68 0.00
344_M 160_L 0.68 0.00
124_L 44_D 0.68 0.00
86_M 183_R 0.68 0.00
302_S 15_A 0.68 0.00
156_G 74_A 0.67 0.00
224_M 142_E 0.67 0.00
246_V 191_E 0.67 0.00
394_I 131_W 0.67 0.00
254_A 114_R 0.67 0.00
242_L 24_R 0.67 0.00
151_L 123_I 0.67 0.00
282_L 223_L 0.67 0.00
68_L 103_A 0.67 0.00
354_L 95_D 0.67 0.00
328_G 200_N 0.67 0.00
262_I 45_R 0.67 0.00
208_V 112_C 0.67 0.00
33_E 20_G 0.67 0.00
330_D 70_A 0.67 0.00
155_V 156_I 0.67 0.00
397_S 71_I 0.66 0.00
29_D 156_I 0.66 0.00
201_M 107_K 0.66 0.00
354_L 233_Q 0.66 0.00
288_D 88_S 0.66 0.00
290_I 4_G 0.66 0.00
52_I 152_V 0.66 0.00
3_D 147_T 0.66 0.00
176_L 231_E 0.66 0.00
249_K 1_M 0.66 0.00
30_T 169_D 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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