| UniProt: | P0A873 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11023 | ||
| Length: | 255 (243) | ||
| Sequences: | 1623 | ||
| Seq/Len: | 6.68 |
| TRMD
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 200_N | 203_E | 4.282 | 1.00 | |
| 186_V | 191_E | 4.005 | 1.00 | |
| 211_Q | 214_G | 3.811 | 1.00 | |
| 94_L | 99_V | 3.619 | 1.00 | |
| 120_E | 124_Q | 3.516 | 1.00 | |
| 87_L | 110_L | 3.097 | 1.00 | |
| 203_E | 206_R | 2.97 | 1.00 | |
| 72_H | 188_E | 2.967 | 1.00 | |
| 41_F | 73_A | 2.934 | 1.00 | |
| 65_Q | 69_D | 2.873 | 1.00 | |
| 133_I | 147_T | 2.826 | 1.00 | |
| 6_I | 38_P | 2.705 | 1.00 | |
| 37_S | 40_D | 2.665 | 1.00 | |
| 43_H | 69_D | 2.552 | 1.00 | |
| 136_Y | 147_T | 2.54 | 1.00 | |
| 94_L | 148_L | 2.304 | 1.00 | |
| 143_L | 147_T | 2.275 | 1.00 | |
| 202_A | 205_R | 2.252 | 1.00 | |
| 31_L | 153_S | 2.245 | 1.00 | |
| 68_R | 187_L | 2.185 | 1.00 | |
| 148_L | 152_V | 2.167 | 1.00 | |
| 14_R | 18_D | 2.143 | 1.00 | |
| 133_I | 136_Y | 2.132 | 1.00 | |
| 186_V | 189_G | 2.104 | 1.00 | |
| 98_G | 131_W | 2.055 | 1.00 | |
| 5_I | 149_I | 2.013 | 1.00 | |
| 98_G | 129_E | 2.013 | 1.00 | |
| 101_E | 129_E | 2.007 | 1.00 | |
| 125_T | 190_M | 2.001 | 1.00 | |
| 209_L | 233_Q | 1.988 | 1.00 | |
| 94_L | 151_S | 1.956 | 1.00 | |
| 4_G | 36_W | 1.891 | 1.00 | |
| 191_E | 194_P | 1.873 | 1.00 | |
| 110_L | 148_L | 1.846 | 1.00 | |
| 98_G | 101_E | 1.795 | 1.00 | |
| 54_Y | 185_E | 1.761 | 1.00 | |
| 68_R | 126_E | 1.751 | 1.00 | |
| 68_R | 188_E | 1.751 | 1.00 | |
| 44_D | 48_T | 1.746 | 1.00 | |
| 139_S | 150_D | 1.741 | 1.00 | |
| 214_G | 218_L | 1.722 | 1.00 | |
| 83_K | 129_E | 1.709 | 1.00 | |
| 48_T | 63_M | 1.67 | 1.00 | |
| 166_A | 169_D | 1.641 | 1.00 | |
| 83_K | 105_N | 1.627 | 1.00 | |
| 23_G | 27_K | 1.621 | 1.00 | |
| 215_R | 219_R | 1.609 | 1.00 | |
| 124_Q | 190_M | 1.601 | 1.00 | |
| 92_R | 129_E | 1.575 | 1.00 | |
| 149_I | 153_S | 1.56 | 0.99 | |
| 96_Q | 155_F | 1.549 | 0.99 | |
| 68_R | 72_H | 1.519 | 0.99 | |
| 4_G | 34_Q | 1.51 | 0.99 | |
| 210_K | 239_E | 1.5 | 0.99 | |
| 13_F | 146_M | 1.488 | 0.99 | |
| 160_L | 166_A | 1.48 | 0.99 | |
| 92_R | 98_G | 1.478 | 0.99 | |
| 99_V | 151_S | 1.471 | 0.99 | |
| 67_L | 111_V | 1.456 | 0.99 | |
| 87_L | 148_L | 1.452 | 0.99 | |
| 130_E | 219_R | 1.45 | 0.99 | |
| 86_Y | 111_V | 1.43 | 0.99 | |
| 52_R | 183_R | 1.429 | 0.99 | |
| 62_M | 118_I | 1.427 | 0.99 | |
| 11_E | 19_Y | 1.42 | 0.99 | |
| 71_I | 126_E | 1.415 | 0.99 | |
| 44_D | 63_M | 1.391 | 0.99 | |
| 2_W | 32_S | 1.387 | 0.98 | |
| 210_K | 243_E | 1.384 | 0.98 | |
| 202_A | 206_R | 1.383 | 0.98 | |
| 90_Q | 215_R | 1.37 | 0.98 | |
| 4_G | 107_K | 1.369 | 0.98 | |
| 11_E | 14_R | 1.344 | 0.98 | |
| 11_E | 37_S | 1.339 | 0.98 | |
| 54_Y | 192_V | 1.334 | 0.98 | |
| 38_P | 62_M | 1.316 | 0.98 | |
| 213_L | 224_L | 1.302 | 0.97 | |
| 82_A | 109_I | 1.293 | 0.97 | |
| 100_S | 172_A | 1.293 | 0.97 | |
| 95_D | 98_G | 1.284 | 0.97 | |
| 36_W | 41_F | 1.265 | 0.97 | |
| 102_L | 131_W | 1.255 | 0.97 | |
| 21_V | 24_R | 1.243 | 0.96 | |
| 53_P | 61_L | 1.239 | 0.96 | |
| 86_Y | 118_I | 1.238 | 0.96 | |
| 171_F | 223_L | 1.236 | 0.96 | |
| 205_R | 232_E | 1.204 | 0.95 | |
| 185_E | 191_E | 1.196 | 0.95 | |
| 2_W | 34_Q | 1.181 | 0.95 | |
| 36_W | 70_A | 1.155 | 0.94 | |
| 58_P | 168_E | 1.133 | 0.93 | |
| 92_R | 95_D | 1.133 | 0.93 | |
| 217_W | 224_L | 1.129 | 0.93 | |
| 64_V | 68_R | 1.117 | 0.92 | |
| 206_R | 210_K | 1.111 | 0.92 | |
| 214_G | 240_F | 1.109 | 0.92 | |
| 110_L | 145_A | 1.108 | 0.92 | |
| 227_L | 233_Q | 1.096 | 0.92 | |
| 30_L | 156_I | 1.093 | 0.91 | |
| 16_I | 146_M | 1.089 | 0.91 | |
| 112_C | 145_A | 1.081 | 0.91 | |
| 4_G | 109_I | 1.069 | 0.90 | |
| 3_I | 149_I | 1.062 | 0.90 | |
| 97_A | 100_S | 1.055 | 0.89 | |
| 18_D | 26_V | 1.048 | 0.89 | |
| 61_L | 180_H | 1.045 | 0.89 | |
| 164_A | 167_T | 1.041 | 0.89 | |
| 209_L | 213_L | 1.037 | 0.88 | |
| 133_I | 144_P | 1.03 | 0.88 | |
| 144_P | 147_T | 1.025 | 0.87 | |
| 3_I | 31_L | 1.018 | 0.87 | |
| 67_L | 118_I | 1.012 | 0.87 | |
| 177_D | 180_H | 1.01 | 0.86 | |
| 209_L | 227_L | 1.004 | 0.86 | |
| 155_F | 172_A | 1.003 | 0.86 | |
| 57_G | 208_R | 1 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1ualA | 1 | 0.9961 | 100 | 0.033 | Contact Map | 0.723 |
| 4mcdA | 1 | 0.9647 | 100 | 0.051 | Contact Map | 0.726 |
| 4h3zA | 2 | 0.9686 | 100 | 0.053 | Contact Map | 0.81 |
| 3ky7A | 1 | 0.9608 | 100 | 0.057 | Contact Map | 0.695 |
| 1oy5A | 3 | 0.9725 | 100 | 0.068 | Contact Map | 0.783 |
| 3knuA | 4 | 0.9098 | 100 | 0.075 | Contact Map | 0.864 |
| 3iefA | 2 | 0.902 | 100 | 0.077 | Contact Map | 0.785 |
| 3quvA | 2 | 0.9216 | 100 | 0.085 | Contact Map | 0.789 |
| 3aiaA | 2 | 0.5373 | 87.2 | 0.957 | Contact Map | 0.545 |
| 4fakA | 1 | 0.5961 | 85.9 | 0.958 | Contact Map | 0.533 |
Sequence Conservation (Image Generated using WebLogo v3)