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OPENSEQ.org

SECF - YAJC
UniProt: P0AG93 - P0ADZ7
Length: 433
Sequences: 651
Seq/Len: 1.58
I_Prob: 0.03

SECF - Protein translocase subunit SecF
Paralog alert: 0.08 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECF
YAJC - UPF0092 membrane protein YajC
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YAJC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
51_D 33_I 1.33 0.03
29_I 28_V 1.22 0.02
51_D 34_F 1.16 0.02
242_T 86_N 1.12 0.02
153_A 43_Q 1.05 0.01
189_S 50_K 1.03 0.01
81_E 29_V 1.03 0.01
218_S 83_I 0.95 0.01
230_R 95_R 0.95 0.01
97_R 95_R 0.94 0.01
242_T 84_A 0.94 0.01
240_S 91_V 0.93 0.01
76_Q 28_V 0.93 0.01
140_A 81_I 0.93 0.01
173_V 95_R 0.92 0.01
205_S 108_K 0.92 0.01
266_G 40_R 0.92 0.01
169_L 110_L 0.91 0.01
86_Q 52_L 0.90 0.01
86_Q 70_G 0.90 0.01
299_L 50_K 0.89 0.01
75_L 104_K 0.88 0.01
171_A 25_L 0.88 0.01
274_S 98_V 0.87 0.01
281_V 54_D 0.87 0.01
263_Y 55_S 0.87 0.01
175_I 25_L 0.86 0.01
281_V 82_A 0.84 0.01
71_M 85_L 0.84 0.01
76_Q 72_V 0.84 0.01
206_V 44_K 0.84 0.01
131_I 95_R 0.84 0.01
289_I 55_S 0.83 0.01
272_G 60_D 0.83 0.01
265_F 32_L 0.83 0.01
242_T 38_I 0.83 0.01
168_R 94_K 0.83 0.01
107_G 77_E 0.82 0.01
205_S 94_K 0.82 0.01
248_T 91_V 0.82 0.01
70_V 12_T 0.82 0.01
290_Y 27_L 0.82 0.01
198_T 70_G 0.82 0.01
187_I 81_I 0.81 0.01
29_I 84_A 0.81 0.01
202_S 72_V 0.81 0.01
132_E 104_K 0.81 0.01
178_A 24_I 0.81 0.01
231_G 56_I 0.80 0.01
32_L 53_M 0.80 0.01
117_V 98_V 0.80 0.01
27_F 73_T 0.80 0.01
50_L 109_A 0.80 0.01
195_I 48_E 0.80 0.01
151_M 54_D 0.80 0.01
157_I 58_K 0.80 0.01
199_I 97_F 0.79 0.01
289_I 78_N 0.79 0.01
191_F 90_E 0.79 0.01
17_Y 86_N 0.78 0.01
51_D 38_I 0.78 0.01
227_K 50_K 0.78 0.01
126_A 62_V 0.77 0.01
172_G 98_V 0.77 0.01
185_L 72_V 0.77 0.01
37_A 87_D 0.77 0.01
139_G 98_V 0.77 0.01
91_S 62_V 0.77 0.01
277_M 97_F 0.77 0.01
190_L 43_Q 0.77 0.01
301_M 95_R 0.76 0.01
84_M 93_I 0.76 0.01
47_N 33_I 0.76 0.01
85_L 24_I 0.76 0.01
54_G 65_N 0.76 0.01
161_V 96_D 0.76 0.01
155_L 98_V 0.75 0.01
281_V 31_G 0.75 0.01
200_V 80_Y 0.75 0.01
170_A 33_I 0.75 0.01
199_I 94_K 0.74 0.01
81_E 32_L 0.74 0.01
151_M 95_R 0.74 0.01
205_S 61_E 0.74 0.01
87_N 68_L 0.74 0.01
44_R 72_V 0.74 0.01
142_L 40_R 0.74 0.01
215_I 38_I 0.74 0.01
215_I 86_N 0.74 0.01
189_S 91_V 0.74 0.01
266_G 49_H 0.74 0.01
218_S 86_N 0.74 0.01
178_A 33_I 0.73 0.01
43_V 62_V 0.73 0.01
270_L 99_A 0.73 0.01
170_A 36_F 0.73 0.01
200_V 94_K 0.72 0.01
129_K 95_R 0.72 0.01
170_A 49_H 0.72 0.01
126_A 28_V 0.72 0.00
53_T 103_P 0.72 0.00
90_S 75_V 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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