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OPENSEQ.org

NUSG - RL1
UniProt: P0AFG0 - P0A7L0
Length: 415
Sequences: 976
Seq/Len: 2.40
I_Prob: 0.00

NUSG - Transcription antitermination protein NusG
Paralog alert: 0.28 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUSG RFAH
RL1 - 50S ribosomal protein L1
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL1
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
12_V 86_A 0.99 0.00
129_E 224_V 0.98 0.00
175_F 200_K 0.96 0.00
126_T 72_S 0.95 0.00
14_A 8_M 0.93 0.00
35_M 44_V 0.93 0.00
111_I 169_G 0.91 0.00
21_R 1_M 0.88 0.00
35_M 1_M 0.87 0.00
48_E 156_A 0.85 0.00
50_V 75_V 0.83 0.00
150_E 15_V 0.83 0.00
135_R 46_V 0.81 0.00
73_M 219_G 0.81 0.00
30_I 130_V 0.81 0.00
114_R 223_A 0.80 0.00
136_V 64_V 0.80 0.00
132_E 109_M 0.78 0.00
60_S 78_F 0.77 0.00
71_V 134_R 0.77 0.00
110_A 134_R 0.76 0.00
62_R 167_K 0.76 0.00
119_G 99_D 0.76 0.00
158_L 193_L 0.76 0.00
117_Q 134_R 0.74 0.00
57_R 75_V 0.74 0.00
129_E 227_A 0.74 0.00
70_L 219_G 0.73 0.00
163_S 54_K 0.73 0.00
17_G 21_Y 0.73 0.00
13_Q 220_A 0.73 0.00
42_V 110_N 0.72 0.00
15_F 125_G 0.72 0.00
172_E 99_D 0.72 0.00
136_V 181_D 0.72 0.00
78_A 175_I 0.71 0.00
115_L 24_N 0.71 0.00
50_V 127_L 0.71 0.00
75_M 59_V 0.71 0.00
65_F 158_A 0.70 0.00
15_F 164_R 0.70 0.00
154_E 69_T 0.70 0.00
53_R 181_D 0.69 0.00
91_G 139_N 0.69 0.00
171_V 46_V 0.69 0.00
83_V 158_A 0.69 0.00
132_E 169_G 0.68 0.00
27_R 150_A 0.68 0.00
136_V 170_I 0.68 0.00
101_A 99_D 0.68 0.00
104_S 11_I 0.68 0.00
44_V 124_V 0.68 0.00
119_G 178_V 0.67 0.00
154_E 32_E 0.67 0.00
93_I 216_T 0.67 0.00
11_V 163_Y 0.67 0.00
110_A 127_L 0.67 0.00
28_E 43_D 0.67 0.00
44_V 213_S 0.66 0.00
87_P 44_V 0.66 0.00
148_V 169_G 0.66 0.00
11_V 122_R 0.66 0.00
177_Q 204_A 0.65 0.00
65_F 71_R 0.65 0.00
23_A 71_R 0.65 0.00
105_D 12_R 0.65 0.00
144_F 76_A 0.65 0.00
83_V 10_V 0.65 0.00
6_K 53_R 0.65 0.00
157_R 179_D 0.65 0.00
70_L 77_V 0.65 0.00
90_M 179_D 0.64 0.00
157_R 165_N 0.64 0.00
96_T 54_K 0.64 0.00
35_M 95_V 0.64 0.00
98_D 63_T 0.64 0.00
75_M 163_Y 0.64 0.00
18_F 47_N 0.63 0.00
95_G 43_D 0.63 0.00
43_M 43_D 0.63 0.00
74_V 214_I 0.63 0.00
180_K 172_H 0.63 0.00
18_F 219_G 0.63 0.00
149_E 97_M 0.63 0.00
50_V 110_N 0.62 0.00
148_V 227_A 0.62 0.00
44_V 99_D 0.62 0.00
120_D 222_V 0.62 0.00
21_R 216_T 0.62 0.00
72_Q 198_K 0.62 0.00
51_E 56_D 0.62 0.00
20_G 163_Y 0.62 0.00
78_A 41_S 0.62 0.00
72_Q 42_V 0.62 0.00
38_L 184_K 0.62 0.00
16_S 168_N 0.62 0.00
53_R 227_A 0.61 0.00
26_L 56_D 0.61 0.00
93_I 214_I 0.61 0.00
113_N 41_S 0.61 0.00
59_K 171_I 0.61 0.00
71_V 216_T 0.61 0.00
120_D 197_K 0.61 0.00
37_D 13_E 0.61 0.00
71_V 107_G 0.61 0.00
40_G 43_D 0.61 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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