May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NUSA - RIMP
UniProt: P0AFF6 - P0A8A8
Length: 645
Sequences: 508
Seq/Len: 0.79
I_Prob: 0.00

NUSA - Transcription elongation protein NusA
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUSA
RIMP - Ribosome maturation factor RimP
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIMP
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
301_D 141_I 1.48 0.00
389_M 127_V 1.41 0.00
50_D 122_G 1.38 0.00
466_D 94_F 1.31 0.00
78_E 117_I 1.26 0.00
453_V 46_I 1.24 0.00
162_I 117_I 1.23 0.00
193_A 11_M 1.23 0.00
66_D 58_V 1.22 0.00
282_Q 40_I 1.18 0.00
66_D 104_R 1.18 0.00
457_E 95_V 1.17 0.00
418_A 22_E 1.17 0.00
338_V 111_R 1.17 0.00
55_D 101_L 1.16 0.00
136_E 56_H 1.16 0.00
68_V 8_L 1.14 0.00
464_I 120_V 1.13 0.00
205_L 41_D 1.13 0.00
135_G 63_D 1.12 0.00
466_D 120_V 1.12 0.00
149_N 94_F 1.12 0.00
91_D 23_L 1.12 0.00
96_Q 58_V 1.11 0.00
53_S 49_D 1.09 0.00
312_G 106_A 1.08 0.00
74_E 30_R 1.08 0.00
187_R 66_D 1.08 0.00
128_D 58_V 1.07 0.00
49_I 8_L 1.07 0.00
200_S 21_F 1.07 0.00
274_V 142_Q 1.06 0.00
240_T 56_H 1.06 0.00
241_N 48_V 1.05 0.00
216_I 21_F 1.05 0.00
384_L 117_I 1.05 0.00
392_L 13_T 1.04 0.00
392_L 65_E 1.03 0.00
403_V 127_V 1.02 0.00
225_A 125_I 1.02 0.00
12_V 63_D 1.02 0.00
55_D 21_F 1.02 0.00
455_T 120_V 1.01 0.00
293_V 38_I 1.01 0.00
48_Q 101_L 1.01 0.00
312_G 116_V 1.00 0.00
110_A 64_V 0.99 0.00
119_R 79_P 0.99 0.00
120_E 44_D 0.99 0.00
110_A 79_P 0.99 0.00
189_E 25_G 0.98 0.00
271_I 144_A 0.98 0.00
218_E 22_E 0.98 0.00
159_E 110_R 0.98 0.00
455_T 122_G 0.97 0.00
326_R 86_F 0.97 0.00
380_T 12_I 0.97 0.00
53_S 59_S 0.97 0.00
122_E 72_Y 0.96 0.00
38_K 137_A 0.96 0.00
160_A 41_D 0.96 0.00
369_F 123_E 0.95 0.00
453_V 119_A 0.95 0.00
202_P 136_F 0.95 0.00
298_V 26_I 0.95 0.00
44_D 103_L 0.94 0.00
210_R 86_F 0.94 0.00
181_G 109_N 0.94 0.00
343_D 112_K 0.93 0.00
213_V 24_V 0.93 0.00
179_V 92_A 0.93 0.00
223_I 6_Q 0.93 0.00
138_I 98_E 0.93 0.00
152_L 49_D 0.92 0.00
155_G 83_R 0.91 0.00
196_F 67_P 0.91 0.00
68_V 81_L 0.91 0.00
71_P 43_E 0.91 0.00
122_E 83_R 0.91 0.00
384_L 56_H 0.91 0.00
38_K 52_A 0.91 0.00
450_A 28_F 0.90 0.00
365_I 45_G 0.89 0.00
447_K 71_A 0.89 0.00
74_E 143_K 0.89 0.00
17_A 58_V 0.89 0.00
130_F 127_V 0.89 0.00
27_L 150_F 0.88 0.00
210_R 25_G 0.88 0.00
461_E 46_I 0.88 0.00
27_L 132_K 0.88 0.00
173_F 136_F 0.87 0.00
130_F 70_V 0.87 0.00
64_V 39_Y 0.87 0.00
283_F 146_L 0.87 0.00
162_I 126_T 0.87 0.00
146_N 82_D 0.87 0.00
296_I 37_R 0.87 0.00
313_N 136_F 0.86 0.00
302_K 38_I 0.86 0.00
197_V 139_S 0.86 0.00
36_K 85_L 0.86 0.00
354_A 106_A 0.86 0.00
466_D 105_M 0.86 0.00
194_Q 147_V 0.86 0.00
283_F 113_W 0.86 0.00
329_S 123_E 0.86 0.00
227_A 49_D 0.85 0.00
218_E 48_V 0.85 0.00
17_A 24_V 0.85 0.00
239_K 141_I 0.84 0.00
472_G 106_A 0.84 0.00
414_L 139_S 0.84 0.00
454_C 42_S 0.84 0.00
117_K 44_D 0.83 0.00
160_A 66_D 0.83 0.00
162_I 31_G 0.83 0.00
186_V 134_E 0.83 0.00
173_F 56_H 0.83 0.00
89_L 130_E 0.83 0.00
14_N 25_G 0.83 0.00
202_P 7_K 0.83 0.00
205_L 46_I 0.83 0.00
250_A 63_D 0.83 0.00
187_R 67_P 0.83 0.00
294_A 10_E 0.82 0.00
8_V 60_A 0.82 0.00
33_T 145_N 0.82 0.00
110_A 63_D 0.82 0.00
126_V 40_I 0.82 0.00
189_E 67_P 0.81 0.00
23_I 24_V 0.81 0.00
28_E 117_I 0.81 0.00
223_I 58_V 0.81 0.00
407_R 37_R 0.81 0.00
120_E 117_I 0.81 0.00
167_M 56_H 0.81 0.00
284_V 48_V 0.81 0.00
342_D 147_V 0.81 0.00
145_V 81_L 0.81 0.00
139_T 101_L 0.81 0.00
452_G 58_V 0.80 0.00
159_E 117_I 0.80 0.00
211_I 103_L 0.80 0.00
148_D 24_V 0.80 0.00
20_R 125_I 0.80 0.00
306_D 63_D 0.80 0.00
186_V 84_P 0.80 0.00
34_A 83_R 0.80 0.00
21_E 15_P 0.80 0.00
396_E 105_M 0.80 0.00
169_P 13_T 0.80 0.00
466_D 108_Q 0.80 0.00
408_E 13_T 0.80 0.00
36_K 39_Y 0.80 0.00
39_Y 102_V 0.80 0.00
68_V 129_V 0.79 0.00
481_L 45_G 0.79 0.00
342_D 91_Y 0.79 0.00
117_K 72_Y 0.79 0.00
218_E 90_H 0.79 0.00
101_T 9_T 0.79 0.00
110_A 59_S 0.79 0.00
274_V 88_A 0.79 0.00
29_S 109_N 0.79 0.00
232_S 48_V 0.79 0.00
350_A 19_L 0.79 0.00
126_V 39_Y 0.79 0.00
473_L 21_F 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0784 seconds.