May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

NUOE - NUOK
UniProt: P0AFD1 - P0AFE4
Length: 266
Sequences: 470
Seq/Len: 1.81
I_Prob: 0.06

NUOE - NADH-quinone oxidoreductase subunit E
Paralog alert: 0.19 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOE
NUOK - NADH-quinone oxidoreductase subunit K
Paralog alert: 0.08 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NUOK
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
164_R 17_L 1.32 0.06
155_P 41_A 1.22 0.04
114_N 33_I 1.15 0.04
53_G 98_M 1.12 0.03
130_P 73_A 1.08 0.03
65_P 79_L 1.08 0.03
162_L 89_N 1.07 0.03
72_V 76_G 1.06 0.03
78_Q 21_G 1.03 0.03
94_S 46_F 1.03 0.03
77_S 16_V 1.01 0.02
132_C 79_L 1.01 0.02
72_V 69_A 1.00 0.02
126_F 38_M 1.00 0.02
132_C 37_I 1.00 0.02
74_T 78_A 0.99 0.02
14_L 89_N 0.97 0.02
111_K 35_L 0.95 0.02
24_H 24_I 0.94 0.02
38_E 7_G 0.94 0.02
78_Q 27_N 0.94 0.02
121_T 5_Q 0.93 0.02
63_G 52_Y 0.93 0.02
135_G 51_S 0.93 0.02
115_I 35_L 0.91 0.02
52_D 98_M 0.91 0.02
29_Y 7_G 0.90 0.02
72_V 84_H 0.90 0.02
62_L 78_A 0.90 0.02
78_Q 34_G 0.88 0.01
135_G 63_I 0.88 0.01
147_E 93_D 0.88 0.01
35_A 76_G 0.87 0.01
35_A 80_L 0.87 0.01
89_I 52_Y 0.86 0.01
58_I 8_L 0.86 0.01
28_H 46_F 0.86 0.01
125_R 11_A 0.85 0.01
51_P 29_L 0.85 0.01
127_T 30_F 0.85 0.01
160_E 11_A 0.85 0.01
143_M 79_L 0.84 0.01
145_I 13_I 0.83 0.01
135_G 86_R 0.83 0.01
36_S 22_L 0.83 0.01
164_R 24_I 0.83 0.01
124_G 81_L 0.82 0.01
156_E 60_V 0.82 0.01
153_L 42_S 0.82 0.01
31_D 41_A 0.81 0.01
26_M 34_G 0.81 0.01
161_L 57_D 0.81 0.01
117_P 47_V 0.81 0.01
82_Q 64_L 0.80 0.01
126_F 51_S 0.80 0.01
79_I 47_V 0.80 0.01
50_V 100_G 0.79 0.01
77_S 62_Y 0.79 0.01
48_G 93_D 0.79 0.01
20_E 19_L 0.78 0.01
88_V 11_A 0.77 0.01
81_R 34_G 0.77 0.01
84_V 21_G 0.77 0.01
124_G 14_L 0.77 0.01
152_H 10_L 0.77 0.01
110_E 17_L 0.77 0.01
162_L 20_T 0.77 0.01
98_H 30_F 0.76 0.01
64_I 51_S 0.76 0.01
15_S 56_T 0.76 0.01
131_T 46_F 0.76 0.01
87_H 64_L 0.75 0.01
73_A 62_Y 0.75 0.01
161_L 9_I 0.75 0.01
158_I 28_L 0.75 0.01
52_D 46_F 0.75 0.01
146_D 71_A 0.75 0.01
145_I 14_L 0.74 0.01
102_Y 37_I 0.74 0.01
17_A 93_D 0.74 0.01
96_V 62_Y 0.74 0.01
24_H 75_I 0.74 0.01
119_Q 75_I 0.74 0.01
132_C 49_A 0.74 0.01
154_T 55_Q 0.74 0.01
69_V 28_L 0.74 0.01
109_L 41_A 0.73 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1027 seconds.