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OPENSEQ.org
NUOA - NUOI
UniProt: P0AFC3 - P0AFD6
Length: 327
Sequences: 227
Seq/Len: 0.74
I_Prob: 0.08
NUOA - NADH-quinone oxidoreductase subunit A
Paralog alert: 0.07 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOA 		NUOI - NADH-quinone oxidoreductase subunit I
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: NUOI
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3i9v9G:3C:9GContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
73_M 62_A 1.74 0.08
72_A 35_E 1.55 0.05
47_N 40_L 1.50 0.04
36_F 44_Y 1.50 0.04
71_V 19_M 1.40 0.03
96_G 12_T 1.34 0.03
99_G 12_T 1.34 0.03
37_L 108_A 1.33 0.03
40_R 136_D 1.28 0.02
58_G 169_E 1.28 0.02
97_W 161_K 1.24 0.02
41_A 131_V 1.22 0.02
32_V 31_R 1.22 0.02
77_I 129_D 1.22 0.02
130_S 6_L 1.21 0.02
77_I 136_D 1.21 0.02
40_R 172_P 1.20 0.02
131_R 159_D 1.19 0.02
96_G 14_V 1.18 0.01
72_A 106_E 1.17 0.01
34_G 21_G 1.16 0.01
20_L 117_T 1.12 0.01
19_F 125_Y 1.11 0.01
84_Y 36_E 1.10 0.01
37_L 22_L 1.09 0.01
46_K 19_M 1.09 0.01
36_F 14_V 1.08 0.01
28_C 132_Y 1.08 0.01
37_L 135_E 1.08 0.01
65_S 89_P 1.07 0.01
90_T 22_L 1.07 0.01
68_F 74_C 1.06 0.01
47_N 26_A 1.05 0.01
57_V 67_A 1.05 0.01
66_A 107_E 1.05 0.01
13_H 92_F 1.05 0.01
66_A 90_E 1.05 0.01
70_L 58_E 1.04 0.01
128_A 159_D 1.04 0.01
40_R 35_E 1.03 0.01
31_L 172_P 1.03 0.01
96_G 20_I 1.03 0.01
96_G 86_R 1.02 0.01
114_L 74_C 1.02 0.01
47_N 176_K 1.02 0.01
25_G 80_A 1.02 0.01
115_V 11_G 1.02 0.01
24_I 161_K 1.01 0.01
85_L 127_R 1.01 0.01
85_L 130_L 1.00 0.01
43_A 22_L 1.00 0.01
101_V 135_E 1.00 0.01
77_I 133_E 1.00 0.01
49_P 69_A 1.00 0.01
128_A 157_A 0.99 0.01
119_R 47_R 0.99 0.01
32_V 80_A 0.99 0.01
73_M 44_Y 0.99 0.01
127_P 156_M 0.99 0.01
131_R 162_D 0.99 0.01
88_W 141_G 0.98 0.01
32_V 161_K 0.98 0.01
95_S 35_E 0.98 0.01
27_C 31_R 0.98 0.01
97_W 113_A 0.98 0.01
23_A 163_K 0.97 0.01
35_W 40_L 0.97 0.01
77_I 117_T 0.96 0.01
39_G 18_W 0.96 0.01
45_S 122_M 0.96 0.01
76_V 87_W 0.96 0.01
31_L 120_F 0.95 0.01
99_G 86_R 0.95 0.01
26_L 86_R 0.94 0.01
31_L 86_R 0.94 0.01
73_M 82_T 0.93 0.01
32_V 37_P 0.93 0.01
77_I 124_E 0.93 0.01
102_E 176_K 0.93 0.01
100_F 32_M 0.93 0.01
9_V 165_E 0.93 0.01
47_N 33_Y 0.93 0.01
56_S 104_L 0.93 0.01
114_L 92_F 0.92 0.01
70_L 151_Y 0.92 0.01
97_W 35_E 0.92 0.01
129_R 154_A 0.92 0.01
87_A 158_I 0.92 0.01
26_L 144_K 0.92 0.01
37_L 14_V 0.91 0.01
31_L 33_Y 0.91 0.01
11_A 168_N 0.91 0.01
77_I 38_V 0.91 0.01
31_L 97_S 0.90 0.01
61_R 59_R 0.90 0.01
82_A 108_A 0.90 0.01
38_G 88_Y 0.90 0.01
71_V 31_R 0.90 0.01
124_D 36_E 0.89 0.01
70_L 62_A 0.89 0.01
118_V 3_L 0.89 0.01
96_G 78_Q 0.89 0.01
44_R 120_F 0.88 0.01
47_N 104_L 0.88 0.01
34_G 106_E 0.88 0.01
66_A 40_L 0.88 0.01
56_S 171_K 0.88 0.01
49_P 47_R 0.88 0.01
20_L 80_A 0.88 0.01
50_F 68_V 0.88 0.01
124_D 154_A 0.88 0.01
132_R 4_K 0.88 0.01
22_V 26_A 0.88 0.01
12_H 90_E 0.87 0.01
31_L 140_S 0.87 0.01
129_R 167_E 0.87 0.01
84_Y 153_M 0.87 0.01
64_L 82_T 0.86 0.01
132_R 170_A 0.86 0.01
77_I 118_P 0.86 0.01
39_G 78_Q 0.86 0.01
24_I 27_K 0.86 0.01
74_F 103_G 0.86 0.01
66_A 132_Y 0.86 0.01
11_A 104_L 0.85 0.01
118_V 87_W 0.85 0.01
110_L 45_R 0.85 0.01
72_A 161_K 0.85 0.01
68_F 118_P 0.85 0.01
41_A 16_S 0.85 0.01
128_A 6_L 0.85 0.01
60_A 18_W 0.85 0.01
129_R 6_L 0.85 0.01
35_W 122_M 0.84 0.01
76_V 61_V 0.84 0.01
76_V 78_Q 0.84 0.01
22_V 147_E 0.84 0.01
92_I 17_I 0.84 0.01
14_W 81_E 0.84 0.01
18_I 179_L 0.84 0.01
126_T 139_I 0.84 0.01
46_K 76_S 0.84 0.01
72_A 47_R 0.84 0.01
121_G 53_D 0.84 0.01
122_A 58_E 0.84 0.01
130_S 153_M 0.83 0.01
38_G 81_E 0.83 0.01
68_F 117_T 0.83 0.01
116_Y 33_Y 0.83 0.00
11_A 135_E 0.83 0.00
25_G 136_D 0.82 0.00
126_T 69_A 0.82 0.00
119_R 104_L 0.82 0.00
29_L 26_A 0.82 0.00
8_E 17_I 0.82 0.00
33_G 32_M 0.82 0.00
83_L 101_F 0.82 0.00
30_M 86_R 0.82 0.00
12_H 38_V 0.82 0.00
129_R 21_G 0.82 0.00
114_L 148_Y 0.82 0.00
90_T 80_A 0.81 0.00
34_G 80_A 0.81 0.00
67_K 127_R 0.81 0.00
17_A 23_H 0.81 0.00
107_I 38_V 0.81 0.00
77_I 33_Y 0.81 0.00
40_R 113_A 0.81 0.00
37_L 35_E 0.81 0.00
13_H 159_D 0.81 0.00
131_R 7_L 0.80 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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