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OPENSEQ.org

MAP1 - RPOA
UniProt: P0AE18 - P0A7Z4
Length: 593
Sequences: 518
Seq/Len: 0.93
I_Prob: 0.00

MAP1 - Methionine aminopeptidase
Paralog alert: 0.96 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: AMPP MAP1 PEPQ YPDF
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
77_V 197_D 1.15 0.00
58_A 177_Y 1.13 0.00
217_M 199_D 1.08 0.00
214_I 291_K 1.08 0.00
145_N 146_V 1.06 0.00
40_E 123_I 1.02 0.00
65_Y 24_A 0.99 0.00
236_H 182_R 0.97 0.00
240_V 85_L 0.96 0.00
21_A 290_L 0.96 0.00
240_V 311_G 0.95 0.00
76_V 35_F 0.95 0.00
244_G 178_S 0.94 0.00
28_I 261_E 0.92 0.00
69_V 121_V 0.92 0.00
153_I 157_T 0.91 0.00
65_Y 164_D 0.91 0.00
124_R 175_A 0.90 0.00
156_F 27_T 0.90 0.00
153_I 305_D 0.89 0.00
36_V 113_A 0.89 0.00
179_E 263_T 0.89 0.00
247_I 21_S 0.89 0.00
173_I 280_D 0.88 0.00
149_I 217_I 0.88 0.00
86_K 107_I 0.87 0.00
173_I 282_V 0.87 0.00
136_A 264_V 0.87 0.00
228_R 64_V 0.86 0.00
28_I 173_V 0.86 0.00
196_K 27_T 0.85 0.00
7_T 80_E 0.85 0.00
224_K 245_E 0.85 0.00
150_G 122_E 0.84 0.00
169_C 165_E 0.84 0.00
148_E 85_L 0.84 0.00
162_F 208_N 0.84 0.00
42_D 314_L 0.84 0.00
153_I 245_E 0.84 0.00
14_M 307_L 0.84 0.00
195_L 123_I 0.84 0.00
141_K 111_T 0.83 0.00
76_V 213_P 0.82 0.00
145_N 100_L 0.81 0.00
78_C 213_P 0.81 0.00
49_I 140_I 0.81 0.00
157_V 211_I 0.81 0.00
73_I 208_N 0.80 0.00
109_T 127_Q 0.80 0.00
156_F 277_Y 0.79 0.00
244_G 232_V 0.79 0.00
63_H 285_T 0.79 0.00
121_M 125_K 0.78 0.00
5_I 23_H 0.78 0.00
40_E 259_D 0.78 0.00
119_T 311_G 0.77 0.00
58_A 211_I 0.77 0.00
10_D 207_T 0.77 0.00
219_D 71_K 0.77 0.00
58_A 59_V 0.76 0.00
23_E 185_Y 0.76 0.00
14_M 56_V 0.76 0.00
112_M 71_K 0.76 0.00
201_F 158_R 0.75 0.00
60_L 305_D 0.75 0.00
24_V 110_V 0.75 0.00
183_V 186_N 0.75 0.00
196_K 220_A 0.75 0.00
65_Y 71_K 0.75 0.00
17_A 198_L 0.74 0.00
207_V 313_S 0.74 0.00
238_I 113_A 0.74 0.00
133_L 136_E 0.74 0.00
67_K 314_L 0.74 0.00
73_I 103_N 0.74 0.00
168_Y 213_P 0.74 0.00
199_M 130_I 0.74 0.00
65_Y 116_T 0.73 0.00
18_G 303_I 0.73 0.00
150_G 108_G 0.73 0.00
202_T 196_T 0.73 0.00
244_G 177_Y 0.72 0.00
96_I 309_S 0.72 0.00
98_V 228_L 0.72 0.00
195_L 142_M 0.72 0.00
240_V 155_A 0.72 0.00
64_G 162_E 0.72 0.00
249_T 110_V 0.72 0.00
130_Q 105_S 0.72 0.00
202_T 300_L 0.72 0.00
64_G 102_L 0.72 0.00
25_L 181_E 0.72 0.00
173_I 71_K 0.72 0.00
3_I 172_L 0.71 0.00
55_A 106_G 0.71 0.00
12_E 94_G 0.71 0.00
89_K 57_T 0.71 0.00
247_I 35_F 0.71 0.00
106_H 205_M 0.71 0.00
195_L 262_L 0.71 0.00
106_H 177_Y 0.71 0.00
201_F 154_P 0.70 0.00
238_I 82_L 0.70 0.00
218_K 71_K 0.70 0.00
156_F 180_V 0.70 0.00
145_N 211_I 0.70 0.00
105_F 164_D 0.70 0.00
145_N 112_A 0.70 0.00
127_R 61_I 0.70 0.00
75_E 237_V 0.70 0.00
133_L 286_E 0.70 0.00
11_I 203_I 0.70 0.00
153_I 175_A 0.70 0.00
93_I 253_L 0.70 0.00
249_T 28_L 0.70 0.00
239_V 261_E 0.70 0.00
173_I 82_L 0.69 0.00
14_M 199_D 0.69 0.00
183_V 64_V 0.69 0.00
154_Q 291_K 0.69 0.00
138_R 282_V 0.69 0.00
41_L 26_V 0.69 0.00
141_K 113_A 0.69 0.00
75_E 177_Y 0.69 0.00
106_H 293_P 0.69 0.00
168_Y 220_A 0.69 0.00
107_G 286_E 0.69 0.00
93_I 71_K 0.69 0.00
240_V 215_E 0.69 0.00
199_M 297_K 0.69 0.00
56_V 71_K 0.69 0.00
150_G 131_C 0.69 0.00
81_I 314_L 0.68 0.00
130_Q 91_R 0.68 0.00
117_K 180_V 0.68 0.00
128_I 130_I 0.68 0.00
219_D 35_F 0.68 0.00
18_G 119_G 0.68 0.00
34_P 283_Q 0.68 0.00
17_A 114_D 0.68 0.00
76_V 117_H 0.68 0.00
73_I 15_D 0.68 0.00
236_H 286_E 0.68 0.00
207_V 311_G 0.68 0.00
14_M 196_T 0.68 0.00
83_D 163_E 0.68 0.00
223_V 272_A 0.68 0.00
107_G 198_L 0.68 0.00
94_V 70_T 0.68 0.00
173_I 72_E 0.68 0.00
207_V 39_L 0.68 0.00
100_V 56_V 0.67 0.00
24_V 173_V 0.67 0.00
60_L 200_K 0.67 0.00
238_I 236_D 0.67 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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