May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RL23 - SECY
UniProt: P0ADZ0 - P0AGA2
Length: 543
Sequences: 799
Seq/Len: 1.51
I_Prob: 0.08

RL23 - 50S ribosomal protein L23
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL23
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
28_N 183_I 1.43 0.08
44_K 44_I 1.38 0.07
11_L 228_F 1.31 0.06
90_G 199_L 1.30 0.05
42_E 180_E 1.17 0.04
47_V 134_G 1.17 0.04
57_V 409_V 1.16 0.04
35_A 116_I 1.13 0.03
52_E 92_I 1.13 0.03
11_L 217_F 1.13 0.03
76_R 27_I 1.09 0.03
31_V 170_F 1.08 0.03
58_V 128_A 1.08 0.03
77_R 17_G 1.07 0.03
65_G 338_N 1.07 0.03
68_K 356_I 1.04 0.03
84_Y 364_K 1.03 0.02
39_T 421_Q 1.02 0.02
76_R 272_A 1.01 0.02
17_S 22_R 1.00 0.02
52_E 44_I 1.00 0.02
33_K 71_A 0.98 0.02
65_G 246_V 0.98 0.02
78_S 82_I 0.97 0.02
44_K 335_L 0.97 0.02
59_N 27_I 0.97 0.02
57_V 306_I 0.95 0.02
96_V 269_V 0.95 0.02
39_T 265_L 0.94 0.02
35_A 125_L 0.94 0.02
28_N 74_R 0.94 0.02
86_T 321_Y 0.93 0.02
39_T 293_W 0.93 0.02
33_K 291_A 0.93 0.02
62_V 337_F 0.92 0.02
52_E 62_E 0.92 0.02
86_T 369_V 0.91 0.02
17_S 26_V 0.91 0.01
17_S 16_L 0.90 0.01
93_L 398_P 0.90 0.01
68_K 60_I 0.90 0.01
78_S 65_N 0.90 0.01
98_G 163_S 0.89 0.01
20_A 18_E 0.89 0.01
65_G 234_V 0.89 0.01
87_L 115_K 0.88 0.01
90_G 67_F 0.88 0.01
95_F 164_L 0.87 0.01
10_V 258_Y 0.86 0.01
91_Q 74_R 0.86 0.01
10_V 420_V 0.86 0.01
89_E 183_I 0.86 0.01
8_L 110_E 0.86 0.01
95_F 256_R 0.86 0.01
94_D 202_A 0.86 0.01
90_G 272_A 0.85 0.01
21_S 83_M 0.85 0.01
47_V 32_V 0.84 0.01
47_V 219_V 0.84 0.01
84_Y 324_A 0.84 0.01
71_G 166_T 0.84 0.01
88_K 379_L 0.84 0.01
74_I 379_L 0.84 0.01
30_I 264_H 0.84 0.01
84_Y 380_Y 0.84 0.01
16_V 346_L 0.84 0.01
93_L 35_I 0.83 0.01
70_H 424_M 0.83 0.01
11_L 38_F 0.83 0.01
77_R 38_F 0.83 0.01
71_G 284_I 0.83 0.01
23_A 128_A 0.83 0.01
43_I 413_I 0.83 0.01
44_K 180_E 0.83 0.01
86_T 407_L 0.82 0.01
15_H 99_H 0.82 0.01
89_E 92_I 0.82 0.01
11_L 350_G 0.82 0.01
63_V 82_I 0.82 0.01
12_R 125_L 0.82 0.01
24_M 366_I 0.82 0.01
43_I 306_I 0.81 0.01
25_E 60_I 0.81 0.01
65_G 179_T 0.81 0.01
39_T 303_L 0.81 0.01
59_N 378_A 0.81 0.01
21_S 67_F 0.81 0.01
59_N 440_G 0.81 0.01
39_T 250_K 0.81 0.01
82_K 423_L 0.81 0.01
52_E 38_F 0.81 0.01
10_V 190_I 0.80 0.01
9_K 103_A 0.80 0.01
21_S 231_T 0.80 0.01
33_K 82_I 0.80 0.01
59_N 180_E 0.80 0.01
11_L 370_M 0.80 0.01
17_S 49_L 0.79 0.01
77_R 74_R 0.79 0.01
67_V 37_S 0.79 0.01
13_A 27_I 0.79 0.01
17_S 293_W 0.79 0.01
87_L 310_L 0.78 0.01
67_V 183_I 0.78 0.01
47_V 119_Y 0.78 0.01
79_D 422_T 0.78 0.01
47_V 349_S 0.78 0.01
41_A 35_I 0.78 0.01
15_H 22_R 0.78 0.01
93_L 410_V 0.77 0.01
39_T 422_T 0.77 0.01
76_R 333_T 0.77 0.01
29_T 321_Y 0.77 0.01
54_E 132_S 0.77 0.01
56_E 379_L 0.77 0.01
67_V 197_A 0.77 0.01
75_G 259_A 0.76 0.01
42_E 381_I 0.76 0.01
89_E 141_N 0.76 0.01
77_R 336_V 0.76 0.01
50_L 95_L 0.76 0.01
92_N 373_L 0.76 0.01
64_K 382_T 0.76 0.01
80_W 426_S 0.76 0.01
88_K 375_L 0.76 0.01
81_K 44_I 0.76 0.01
81_K 234_V 0.75 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0159 seconds.