May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

LPTA - PTSO
UniProt: P0ADV1 - P0A9N0
Length: 275
Sequences: 159
Seq/Len: 0.62
I_Prob: 0.00

LPTA - Lipopolysaccharide export system protein LptA
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LPTA
PTSO - Phosphocarrier protein NPr
Paralog alert: 0.51 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: PTHP PTSO
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
140_K 71_Q 1.41 0.00
155_D 6_T 1.38 0.00
60_V 51_A 1.34 0.00
43_Q 44_A 1.32 0.00
141_I 9_I 1.28 0.00
91_K 63_I 1.25 0.00
42_Q 83_F 1.24 0.00
162_T 49_V 1.22 0.00
164_L 6_T 1.16 0.00
41_D 71_Q 1.14 0.00
47_M 79_V 1.14 0.00
112_M 46_A 1.14 0.00
92_P 20_A 1.13 0.00
141_I 83_F 1.11 0.00
107_G 12_K 1.11 0.00
152_A 20_A 1.10 0.00
41_D 40_E 1.06 0.00
95_F 20_A 1.05 0.00
87_D 65_V 1.04 0.00
141_I 13_L 1.04 0.00
150_M 72_E 1.03 0.00
116_L 44_A 1.03 0.00
40_S 81_A 1.01 0.00
132_V 45_E 1.00 0.00
126_N 73_E 0.99 0.00
163_V 41_G 0.99 0.00
124_T 36_L 0.98 0.00
25_A 70_P 0.98 0.00
19_L 52_L 0.97 0.00
152_A 51_A 0.96 0.00
109_A 27_M 0.95 0.00
39_E 67_A 0.95 0.00
131_Q 26_L 0.95 0.00
33_D 65_V 0.94 0.00
12_L 52_L 0.94 0.00
67_I 9_I 0.94 0.00
94_T 58_A 0.94 0.00
70_D 63_I 0.94 0.00
54_F 10_T 0.93 0.00
155_D 71_Q 0.92 0.00
24_P 63_I 0.91 0.00
141_I 75_A 0.91 0.00
115_E 30_F 0.90 0.00
133_D 41_G 0.90 0.00
32_T 12_K 0.90 0.00
164_L 28_Q 0.90 0.00
147_E 24_F 0.90 0.00
99_Q 23_L 0.90 0.00
45_L 51_A 0.89 0.00
164_L 74_E 0.89 0.00
25_A 73_E 0.89 0.00
103_K 79_V 0.89 0.00
128_Y 79_V 0.88 0.00
67_I 87_F 0.88 0.00
23_I 73_E 0.88 0.00
93_A 20_A 0.88 0.00
138_G 60_G 0.88 0.00
157_G 34_V 0.87 0.00
36_I 5_Q 0.86 0.00
52_V 51_A 0.86 0.00
148_Q 76_L 0.86 0.00
74_V 63_I 0.85 0.00
33_D 79_V 0.85 0.00
24_P 77_A 0.85 0.00
146_K 83_F 0.85 0.00
117_A 67_A 0.84 0.00
64_T 80_I 0.84 0.00
54_F 56_D 0.84 0.00
140_K 81_A 0.84 0.00
36_I 58_A 0.84 0.00
100_D 51_A 0.84 0.00
162_T 57_S 0.84 0.00
56_G 27_M 0.84 0.00
120_F 44_A 0.84 0.00
142_T 76_L 0.83 0.00
98_M 12_K 0.83 0.00
60_V 33_E 0.83 0.00
50_N 57_S 0.83 0.00
141_I 20_A 0.82 0.00
117_A 73_E 0.82 0.00
103_K 28_Q 0.82 0.00
39_E 74_E 0.82 0.00
112_M 52_L 0.82 0.00
23_I 70_P 0.82 0.00
91_K 33_E 0.81 0.00
117_A 12_K 0.81 0.00
118_K 73_E 0.81 0.00
28_V 61_R 0.81 0.00
81_Q 68_T 0.81 0.00
43_Q 56_D 0.81 0.00
113_H 50_I 0.81 0.00
102_G 63_I 0.80 0.00
109_A 19_P 0.80 0.00
49_G 83_F 0.80 0.00
123_L 45_E 0.80 0.00
185_N 52_L 0.80 0.00
50_N 38_N 0.80 0.00
46_D 28_Q 0.79 0.00
77_P 30_F 0.79 0.00
14_L 24_F 0.79 0.00
164_L 47_N 0.78 0.00
86_I 15_M 0.78 0.00
52_V 90_D 0.78 0.00
154_S 53_L 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.083 seconds.