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OPENSEQ.org

TAMA - UPPS
UniProt: P0ADE4 - P60472
Length: 830
Sequences: 541
Seq/Len: 0.73
I_Prob: 0.00

TAMA - Translocation and assembly module TamA
Paralog alert: 0.76 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: TAMA
UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
443_H 229_F 1.44 0.00
98_V 167_L 1.37 0.00
218_Y 29_G 1.36 0.00
414_D 189_V 1.27 0.00
266_N 146_G 1.24 0.00
415_Y 236_F 1.20 0.00
218_Y 39_R 1.16 0.00
453_W 107_L 1.16 0.00
268_I 24_I 1.15 0.00
469_F 93_L 1.15 0.00
540_V 177_L 1.13 0.00
193_H 62_I 1.12 0.00
547_P 39_R 1.12 0.00
317_M 196_G 1.11 0.00
286_W 229_F 1.10 0.00
302_T 21_V 1.10 0.00
548_V 105_V 1.10 0.00
77_P 220_L 1.09 0.00
447_T 158_L 1.07 0.00
147_K 19_R 1.06 0.00
188_R 47_A 1.05 0.00
284_A 115_R 1.04 0.00
313_F 233_L 1.04 0.00
378_E 62_I 1.04 0.00
362_Q 184_H 1.03 0.00
104_V 57_A 1.03 0.00
312_D 240_E 1.03 0.00
213_K 147_G 1.03 0.00
65_I 58_A 1.02 0.00
256_L 21_V 1.02 0.00
548_V 89_F 1.02 0.00
296_H 183_M 1.01 0.00
517_A 49_S 1.00 0.00
286_W 137_L 1.00 0.00
281_R 37_K 1.00 0.00
542_V 163_Q 1.00 0.00
453_W 72_S 0.98 0.00
158_Y 215_Y 0.97 0.00
441_D 236_F 0.97 0.00
520_V 97_V 0.96 0.00
179_W 18_C 0.96 0.00
206_L 48_K 0.96 0.00
188_R 72_S 0.95 0.00
162_E 57_A 0.95 0.00
98_V 105_V 0.95 0.00
217_E 92_A 0.95 0.00
440_Y 175_E 0.95 0.00
308_E 223_D 0.94 0.00
558_P 120_L 0.94 0.00
104_V 127_S 0.94 0.00
138_N 209_I 0.94 0.00
196_F 45_A 0.93 0.00
178_F 60_N 0.93 0.00
183_Y 167_L 0.93 0.00
194_V 62_I 0.93 0.00
164_T 146_G 0.93 0.00
476_I 225_D 0.92 0.00
296_H 196_G 0.92 0.00
384_M 23_I 0.92 0.00
426_F 22_A 0.91 0.00
310_T 247_E 0.91 0.00
398_R 106_R 0.91 0.00
174_L 67_L 0.90 0.00
552_K 116_F 0.90 0.00
503_S 189_V 0.90 0.00
440_Y 82_V 0.90 0.00
87_P 243_F 0.90 0.00
94_L 234_N 0.89 0.00
68_G 45_A 0.89 0.00
78_T 220_L 0.89 0.00
483_S 188_P 0.89 0.00
570_Y 92_A 0.89 0.00
183_Y 105_V 0.89 0.00
222_D 105_V 0.89 0.00
530_R 235_A 0.88 0.00
547_P 29_G 0.88 0.00
551_I 144_N 0.88 0.00
140_G 229_F 0.88 0.00
195_T 105_V 0.88 0.00
276_T 196_G 0.88 0.00
275_S 68_Y 0.88 0.00
546_S 39_R 0.88 0.00
149_L 155_V 0.88 0.00
346_S 119_R 0.87 0.00
546_S 124_I 0.87 0.00
102_V 51_R 0.87 0.00
263_R 220_L 0.87 0.00
537_G 172_I 0.87 0.00
329_L 82_V 0.87 0.00
371_L 220_L 0.87 0.00
291_M 162_V 0.86 0.00
468_F 121_Q 0.86 0.00
135_T 170_D 0.86 0.00
141_D 229_F 0.86 0.00
200_Q 57_A 0.86 0.00
508_Y 189_V 0.86 0.00
271_G 39_R 0.86 0.00
457_G 76_N 0.86 0.00
222_D 21_V 0.85 0.00
156_K 68_Y 0.85 0.00
345_D 54_V 0.85 0.00
136_V 129_A 0.85 0.00
178_F 56_F 0.85 0.00
416_S 62_I 0.85 0.00
158_Y 78_P 0.85 0.00
96_A 113_T 0.85 0.00
271_G 29_G 0.85 0.00
65_I 233_L 0.84 0.00
98_V 238_N 0.84 0.00
514_W 169_P 0.84 0.00
116_G 33_K 0.84 0.00
420_W 89_F 0.84 0.00
561_D 155_V 0.84 0.00
328_Y 158_L 0.84 0.00
502_G 158_L 0.84 0.00
194_V 199_H 0.84 0.00
160_D 189_V 0.83 0.00
551_I 151_I 0.83 0.00
268_I 237_A 0.83 0.00
397_S 189_V 0.83 0.00
89_K 112_D 0.83 0.00
312_D 57_A 0.83 0.00
515_W 120_L 0.83 0.00
410_R 104_N 0.83 0.00
254_L 188_P 0.82 0.00
179_W 107_L 0.82 0.00
302_T 49_S 0.82 0.00
349_L 156_R 0.82 0.00
149_L 178_N 0.82 0.00
542_V 62_I 0.82 0.00
272_V 93_L 0.82 0.00
449_G 163_Q 0.82 0.00
546_S 29_G 0.82 0.00
153_A 89_F 0.82 0.00
404_T 33_K 0.81 0.00
369_W 133_G 0.81 0.00
260_V 214_L 0.81 0.00
409_Q 68_Y 0.81 0.00
373_H 105_V 0.81 0.00
191_F 128_E 0.81 0.00
105_L 112_D 0.81 0.00
311_L 57_A 0.81 0.00
548_V 55_S 0.81 0.00
553_L 93_L 0.81 0.00
275_S 102_R 0.81 0.00
79_I 170_D 0.81 0.00
548_V 247_E 0.81 0.00
276_T 229_F 0.80 0.00
515_W 69_A 0.80 0.00
104_V 179_Q 0.80 0.00
84_R 171_Q 0.80 0.00
177_A 155_V 0.80 0.00
426_F 122_E 0.80 0.00
426_F 50_V 0.80 0.00
493_L 225_D 0.80 0.00
561_D 158_L 0.80 0.00
426_F 181_V 0.80 0.00
342_T 177_L 0.80 0.00
258_G 21_V 0.80 0.00
276_T 144_N 0.80 0.00
499_L 97_V 0.80 0.00
288_K 155_V 0.80 0.00
432_Q 152_V 0.80 0.00
110_D 129_A 0.80 0.00
526_V 37_K 0.80 0.00
89_K 179_Q 0.80 0.00
376_Q 136_G 0.80 0.00
68_G 144_N 0.80 0.00
111_V 212_A 0.79 0.00
280_P 196_G 0.79 0.00
179_W 180_H 0.79 0.00
176_K 159_A 0.79 0.00
347_T 53_A 0.79 0.00
71_A 68_Y 0.79 0.00
68_G 35_Q 0.79 0.00
183_Y 219_V 0.79 0.00
531_R 209_I 0.79 0.00
355_W 29_G 0.79 0.00
265_E 223_D 0.79 0.00
221_K 23_I 0.79 0.00
554_D 89_F 0.79 0.00
120_D 101_H 0.79 0.00
320_L 214_L 0.79 0.00
65_I 170_D 0.79 0.00
563_D 33_K 0.79 0.00
193_H 108_R 0.79 0.00
504_L 243_F 0.79 0.00
212_F 150_D 0.79 0.00
363_R 48_K 0.78 0.00
207_Q 46_G 0.78 0.00
185_S 68_Y 0.78 0.00
394_R 245_G 0.78 0.00
523_G 174_E 0.78 0.00
495_G 207_W 0.78 0.00
397_S 57_A 0.78 0.00
279_G 162_V 0.78 0.00
199_S 236_F 0.78 0.00
499_L 29_G 0.78 0.00
98_V 231_G 0.78 0.00
104_V 158_L 0.78 0.00
503_S 159_A 0.78 0.00
317_M 183_M 0.78 0.00
480_K 121_Q 0.78 0.00
102_V 158_L 0.77 0.00
194_V 108_R 0.77 0.00
255_P 217_T 0.77 0.00
196_F 236_F 0.77 0.00
65_I 125_R 0.77 0.00
426_F 236_F 0.77 0.00
284_A 170_D 0.77 0.00
540_V 240_E 0.77 0.00
210_V 152_V 0.77 0.00
434_V 233_L 0.77 0.00
430_Q 214_L 0.77 0.00
375_T 223_D 0.77 0.00
179_W 113_T 0.77 0.00
67_E 72_S 0.77 0.00
171_A 152_V 0.77 0.00
135_T 205_L 0.77 0.00
264_T 87_E 0.77 0.00
159_F 39_R 0.77 0.00
98_V 82_V 0.77 0.00
104_V 109_I 0.77 0.00
268_I 219_V 0.77 0.00
525_A 120_L 0.76 0.00
141_D 212_A 0.76 0.00
515_W 112_D 0.76 0.00
569_F 109_I 0.76 0.00
250_E 21_V 0.76 0.00
446_V 57_A 0.76 0.00
255_P 149_W 0.76 0.00
287_K 109_I 0.76 0.00
355_W 39_R 0.76 0.00
206_L 148_R 0.76 0.00
226_L 132_A 0.76 0.00
183_Y 168_Q 0.76 0.00
119_T 21_V 0.76 0.00
153_A 116_F 0.76 0.00
271_G 40_A 0.76 0.00
482_K 64_A 0.76 0.00
501_T 29_G 0.75 0.00
366_N 144_N 0.75 0.00
510_V 229_F 0.75 0.00
274_Y 136_G 0.75 0.00
263_R 212_A 0.75 0.00
99_T 161_K 0.75 0.00
444_R 90_V 0.75 0.00
534_F 173_D 0.75 0.00
426_F 21_V 0.75 0.00
150_T 41_F 0.75 0.00
526_V 44_K 0.75 0.00
574_G 107_L 0.75 0.00
223_L 137_L 0.75 0.00
544_W 120_L 0.75 0.00
398_R 62_I 0.75 0.00
541_G 144_N 0.75 0.00
209_L 232_A 0.75 0.00
170_I 196_G 0.75 0.00
104_V 67_L 0.75 0.00
520_V 135_T 0.74 0.00
567_L 189_V 0.74 0.00
493_L 141_I 0.74 0.00
305_S 186_L 0.74 0.00
118_R 67_L 0.74 0.00
526_V 29_G 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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