May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

CDSA - RNH2
UniProt: P0ABG1 - P10442
Length: 483
Sequences: 394
Seq/Len: 0.87
I_Prob: 0.04

CDSA - Phosphatidate cytidylyltransferase
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CDSA YNBB
RNH2 - Ribonuclease HII
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNH2
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
268_T 166_P 1.61 0.04
30_I 50_S 1.46 0.02
251_G 124_K 1.40 0.02
225_I 50_S 1.37 0.02
179_K 32_V 1.34 0.02
189_T 12_V 1.31 0.02
197_L 191_K 1.25 0.01
200_A 29_T 1.24 0.01
177_K 123_V 1.22 0.01
221_L 50_S 1.21 0.01
241_F 174_L 1.16 0.01
267_L 69_S 1.16 0.01
177_K 176_E 1.15 0.01
106_Y 18_V 1.15 0.01
272_P 27_V 1.14 0.01
156_Y 71_G 1.14 0.01
208_G 44_N 1.14 0.01
158_M 107_I 1.12 0.01
21_F 124_K 1.12 0.01
94_G 76_H 1.11 0.01
107_P 18_V 1.09 0.01
267_L 111_R 1.09 0.01
14_P 50_S 1.08 0.01
195_G 190_V 1.08 0.01
107_P 180_T 1.05 0.01
13_I 73_A 1.05 0.01
152_I 175_A 1.05 0.01
126_L 15_V 1.03 0.01
128_I 166_P 1.03 0.01
99_A 74_E 1.02 0.01
260_I 28_V 1.02 0.01
89_L 147_M 1.01 0.01
39_A 96_A 1.01 0.01
184_V 26_A 1.00 0.01
246_G 102_P 0.99 0.01
232_V 129_V 0.99 0.01
184_V 27_V 0.99 0.01
99_A 115_L 0.98 0.01
9_A 185_R 0.98 0.01
119_L 133_S 0.98 0.01
250_S 189_P 0.98 0.01
22_L 147_M 0.97 0.01
250_S 82_N 0.96 0.01
190_W 190_V 0.96 0.01
253_L 174_L 0.96 0.01
175_F 107_I 0.95 0.01
202_V 181_E 0.94 0.01
193_F 87_T 0.94 0.01
267_L 76_H 0.94 0.01
267_L 105_V 0.94 0.01
198_A 172_E 0.94 0.01
260_I 70_L 0.94 0.01
26_V 138_L 0.94 0.01
58_L 166_P 0.94 0.01
201_A 154_F 0.94 0.01
241_F 29_T 0.94 0.01
264_I 150_L 0.93 0.01
97_I 67_S 0.93 0.01
62_C 12_V 0.93 0.01
150_G 115_L 0.93 0.01
96_W 110_N 0.92 0.01
245_A 87_T 0.92 0.01
171_F 174_L 0.92 0.01
136_L 173_K 0.92 0.01
205_W 156_Q 0.92 0.01
198_A 148_A 0.92 0.01
70_L 177_H 0.92 0.01
89_L 131_E 0.91 0.01
271_V 87_T 0.91 0.01
278_L 24_V 0.91 0.01
32_T 107_I 0.91 0.01
130_P 147_M 0.91 0.01
252_H 123_V 0.91 0.01
43_W 132_I 0.91 0.01
102_L 150_L 0.91 0.01
34_V 76_H 0.90 0.01
189_T 127_S 0.90 0.00
161_V 91_M 0.89 0.00
222_I 180_T 0.89 0.00
36_C 191_K 0.89 0.00
123_F 151_D 0.89 0.00
46_L 124_K 0.88 0.00
203_I 28_V 0.88 0.00
43_W 113_P 0.88 0.00
17_I 154_F 0.88 0.00
166_S 32_V 0.87 0.00
277_L 53_R 0.87 0.00
33_L 64_K 0.87 0.00
193_F 92_Q 0.86 0.00
139_R 127_S 0.86 0.00
43_W 40_I 0.86 0.00
113_W 146_E 0.86 0.00
113_W 26_A 0.86 0.00
121_L 56_A 0.86 0.00
278_L 87_T 0.85 0.00
201_A 75_P 0.85 0.00
47_S 120_M 0.84 0.00
230_A 186_S 0.84 0.00
75_E 187_F 0.84 0.00
3_K 174_L 0.84 0.00
184_V 78_I 0.84 0.00
53_S 122_V 0.84 0.00
23_L 35_D 0.84 0.00
10_F 62_K 0.84 0.00
116_S 49_L 0.84 0.00
140_A 181_E 0.83 0.00
162_W 88_M 0.83 0.00
134_G 177_H 0.83 0.00
184_V 128_R 0.83 0.00
60_V 160_A 0.83 0.00
199_T 150_L 0.83 0.00
214_D 153_V 0.83 0.00
238_E 94_A 0.83 0.00
139_R 53_R 0.83 0.00
171_F 44_N 0.83 0.00
231_S 109_G 0.82 0.00
173_K 189_P 0.82 0.00
56_V 191_K 0.82 0.00
250_S 22_P 0.82 0.00
277_L 58_Y 0.82 0.00
240_M 24_V 0.82 0.00
103_V 124_K 0.82 0.00
278_L 168_A 0.82 0.00
221_L 55_L 0.81 0.00
103_V 28_V 0.81 0.00
54_Q 177_H 0.81 0.00
178_H 100_I 0.81 0.00
139_R 24_V 0.81 0.00
223_C 191_K 0.81 0.00
251_G 74_E 0.81 0.00
268_T 13_A 0.81 0.00
151_A 68_W 0.81 0.00
177_K 193_A 0.80 0.00
100_L 141_V 0.80 0.00
157_V 124_K 0.80 0.00
24_P 124_K 0.80 0.00
197_L 115_L 0.80 0.00
9_A 97_G 0.80 0.00
189_T 163_K 0.80 0.00
18_A 163_K 0.80 0.00
203_I 154_F 0.80 0.00
210_W 180_T 0.80 0.00
43_W 82_N 0.80 0.00
231_S 57_L 0.80 0.00
271_V 13_A 0.79 0.00
127_T 158_G 0.79 0.00
272_P 89_L 0.79 0.00
10_F 33_I 0.79 0.00
95_W 141_V 0.79 0.00
131_F 85_H 0.79 0.00
184_V 23_L 0.79 0.00
253_L 142_T 0.79 0.00
231_S 23_L 0.79 0.00
277_L 124_K 0.79 0.00
124_G 40_I 0.78 0.00
250_S 107_I 0.78 0.00
184_V 62_K 0.78 0.00
204_S 193_A 0.78 0.00
96_W 189_P 0.78 0.00
61_L 62_K 0.78 0.00
196_G 110_N 0.78 0.00
151_A 67_S 0.78 0.00
17_I 145_A 0.78 0.00
246_G 122_V 0.78 0.00
228_A 112_C 0.78 0.00
266_S 130_P 0.77 0.00
232_V 173_K 0.77 0.00
11_V 107_I 0.77 0.00
46_L 132_I 0.77 0.00
97_I 50_S 0.77 0.00
133_W 107_I 0.77 0.00
63_G 55_L 0.77 0.00
37_M 172_E 0.77 0.00
197_L 149_A 0.77 0.00
254_I 158_G 0.77 0.00
130_P 43_L 0.77 0.00
274_F 151_D 0.77 0.00
233_L 26_A 0.77 0.00
189_T 159_F 0.77 0.00
170_M 113_P 0.76 0.00
272_P 71_G 0.76 0.00
37_M 123_V 0.76 0.00
213_L 69_S 0.76 0.00
124_G 61_I 0.76 0.00
20_L 124_K 0.76 0.00
40_A 112_C 0.76 0.00
157_V 123_V 0.76 0.00
31_V 195_G 0.76 0.00
4_Y 98_L 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.035 seconds.