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OPENSEQ.org

YNBB - Uncharacterized protein YnbB
UniProt: P76091 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13749
Length: 298 (264)
Sequences: 991
Seq/Len: 3.75

YNBB
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CDSA YNBB
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
43_W 269_L 4.044 1.00
253_M 265_S 3.43 1.00
183_A 215_T 3.233 1.00
194_R 207_E 3.187 1.00
187_W 191_C 3.054 1.00
189_K 205_T 2.99 1.00
209_L 247_F 2.664 1.00
187_W 215_T 2.508 1.00
186_L 190_S 2.504 1.00
41_T 186_L 2.5 1.00
75_Y 141_G 2.354 1.00
220_S 239_G 2.194 1.00
196_V 209_L 2.066 1.00
193_R 207_E 2.04 1.00
272_H 278_R 1.985 1.00
67_I 275_L 1.905 1.00
73_K 77_T 1.813 0.99
180_N 247_F 1.771 0.99
71_A 275_L 1.768 0.99
136_S 140_W 1.746 0.99
179_S 219_A 1.693 0.99
192_G 207_E 1.659 0.99
180_N 243_G 1.637 0.99
188_G 263_K 1.61 0.98
39_I 42_W 1.6 0.98
210_M 214_I 1.565 0.98
78_L 265_S 1.556 0.98
78_L 262_V 1.553 0.98
187_W 211_G 1.542 0.98
194_R 206_L 1.525 0.98
185_Y 272_H 1.513 0.97
155_L 293_I 1.494 0.97
37_L 186_L 1.463 0.97
40_R 44_G 1.443 0.96
51_M 63_F 1.437 0.96
204_K 273_G 1.431 0.96
180_N 186_L 1.403 0.95
201_S 204_K 1.393 0.95
196_V 206_L 1.381 0.95
201_S 273_G 1.38 0.95
200_V 255_A 1.376 0.95
202_P 263_K 1.359 0.94
38_R 42_W 1.344 0.94
201_S 263_K 1.344 0.94
188_G 202_P 1.34 0.94
204_K 263_K 1.335 0.94
221_L 236_L 1.333 0.94
67_I 279_I 1.315 0.93
144_M 149_L 1.312 0.93
124_L 248_C 1.312 0.93
58_W 62_T 1.3 0.92
174_L 282_L 1.293 0.92
213_V 243_G 1.292 0.92
188_G 273_G 1.286 0.92
195_K 198_P 1.273 0.91
144_M 253_M 1.268 0.91
263_K 273_G 1.238 0.90
196_V 247_F 1.235 0.90
59_M 63_F 1.233 0.89
188_G 201_S 1.227 0.89
66_L 70_L 1.226 0.89
144_M 148_A 1.223 0.89
207_E 272_H 1.21 0.88
37_L 41_T 1.202 0.88
217_M 236_L 1.193 0.87
224_G 235_A 1.192 0.87
282_L 286_A 1.183 0.87
202_P 254_S 1.178 0.86
195_K 203_G 1.176 0.86
177_T 285_T 1.175 0.86
151_H 154_W 1.172 0.86
37_L 40_R 1.166 0.86
234_Q 292_F 1.166 0.86
127_D 197_V 1.163 0.85
169_L 173_L 1.162 0.85
177_T 282_L 1.158 0.85
177_T 265_S 1.154 0.85
131_F 134_T 1.153 0.85
174_L 178_E 1.138 0.84
54_S 59_M 1.134 0.83
206_L 210_M 1.117 0.82
216_I 223_I 1.114 0.82
38_R 41_T 1.114 0.82
90_G 262_V 1.11 0.82
180_N 246_G 1.097 0.81
231_N 234_Q 1.095 0.80
40_R 43_W 1.094 0.80
176_L 180_N 1.07 0.78
196_V 205_T 1.069 0.78
254_S 263_K 1.068 0.78
188_G 204_K 1.065 0.78
70_L 275_L 1.058 0.77
55_G 59_M 1.053 0.77
180_N 209_L 1.045 0.76
38_R 43_W 1.033 0.75
141_G 276_L 1.026 0.74
110_I 113_A 1.023 0.74
242_I 253_M 1.022 0.74
252_V 256_I 1.018 0.73
254_S 264_D 1.016 0.73
60_T 153_A 1.012 0.73
211_G 263_K 1.011 0.72
151_H 291_Y 1.011 0.72
262_V 265_S 1.009 0.72
149_L 283_I 1.003 0.72
188_G 254_S 1.001 0.71
202_P 273_G 1 0.71
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1q90G10.124216.10.965Contact Map
4h44G10.124211.40.967Contact Map
2ks1B10.10746.10.971Contact Map
2jwaA20.10450.972Contact Map
2l2tA20.11074.10.974Contact Map
4b19A10.09732.60.976Contact Map
2wswA10.27182.50.976Contact Map0.327
1wazA10.09420.978Contact Map
2k1kA20.12751.40.979Contact Map0.198
1fqjC10.11741.40.979Contact Map0

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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