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OPENSEQ.org
YBGJ - YBGK
UniProt: P0AAV4 - P75745
Length: 528
Sequences: 715
Seq/Len: 1.38
I_Prob: 0.91
YBGJ - Uncharacterized protein YbgJ
Paralog alert: 0.24 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YBGJ 		YBGK - Uncharacterized protein YbgK
Paralog alert: 0.16 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YBGK
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3mmlAEGC:BHDFContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_E 263_E 2.02 0.91
129_F 252_T 1.88 0.86
49_G 227_H 1.87 0.85
54_T 228_G 1.77 0.81
57_L 289_L 1.67 0.75
153_E 239_N 1.41 0.53
38_V 23_Q 1.35 0.46
133_Q 227_H 1.24 0.36
52_N 227_H 1.23 0.35
166_G 227_H 1.19 0.31
48_P 228_G 1.17 0.29
158_V 205_N 1.12 0.25
169_Q 250_Q 1.10 0.23
25_A 244_V 1.04 0.19
200_I 26_I 1.03 0.18
193_D 24_S 1.02 0.18
14_V 144_L 1.02 0.17
51_N 183_H 1.00 0.17
99_G 148_D 0.99 0.16
45_E 20_G 0.99 0.15
148_T 223_E 0.96 0.14
135_G 206_R 0.95 0.14
154_P 243_I 0.95 0.13
166_G 198_W 0.95 0.13
22_V 225_L 0.95 0.13
56_I 246_M 0.93 0.12
140_G 250_Q 0.92 0.12
117_V 195_R 0.92 0.12
192_F 26_I 0.91 0.11
190_S 4_I 0.90 0.11
212_P 53_L 0.90 0.11
129_F 180_P 0.90 0.11
90_I 243_I 0.90 0.11
138_Y 240_G 0.89 0.10
181_W 226_S 0.89 0.10
145_Q 147_G 0.89 0.10
7_Y 180_P 0.88 0.10
208_V 260_C 0.88 0.10
56_I 228_G 0.88 0.10
150_R 226_S 0.88 0.10
132_F 207_M 0.87 0.10
76_E 244_V 0.87 0.09
57_L 102_L 0.87 0.09
166_G 249_A 0.86 0.09
49_G 224_L 0.86 0.09
14_V 126_G 0.86 0.09
156_L 210_R 0.85 0.09
138_Y 235_Q 0.85 0.09
16_L 198_W 0.85 0.09
49_G 252_T 0.85 0.09
114_K 94_M 0.85 0.09
133_Q 110_R 0.85 0.09
112_S 126_G 0.85 0.09
55_V 124_V 0.84 0.08
146_L 113_L 0.83 0.08
150_R 240_G 0.83 0.08
200_I 24_S 0.83 0.08
181_W 240_G 0.83 0.08
133_Q 27_S 0.82 0.08
9_I 257_R 0.82 0.08
206_D 245_L 0.82 0.07
149_P 13_V 0.82 0.07
172_V 246_M 0.82 0.07
159_P 147_G 0.82 0.07
129_F 227_H 0.82 0.07
64_A 289_L 0.81 0.07
9_I 181_E 0.81 0.07
169_Q 249_A 0.81 0.07
50_M 250_Q 0.81 0.07
112_S 61_T 0.81 0.07
146_L 192_A 0.80 0.07
13_A 230_L 0.80 0.07
174_P 238_H 0.80 0.07
45_E 276_Q 0.80 0.07
88_I 110_R 0.80 0.07
75_W 205_N 0.80 0.07
14_V 286_E 0.80 0.07
170_T 251_T 0.79 0.06
102_L 62_V 0.79 0.06
191_L 239_N 0.78 0.06
65_L 286_E 0.78 0.06
133_Q 134_V 0.78 0.06
66_D 187_R 0.78 0.06
181_W 256_P 0.78 0.06
138_Y 252_T 0.78 0.06
150_R 256_P 0.78 0.06
80_A 101_T 0.77 0.06
13_A 85_A 0.77 0.06
49_G 218_R 0.77 0.06
129_F 131_D 0.77 0.06
170_T 250_Q 0.77 0.06
87_F 174_I 0.77 0.06
12_T 234_V 0.76 0.06
122_S 4_I 0.76 0.06
162_S 274_L 0.76 0.06
199_P 26_I 0.76 0.06
116_V 21_F 0.76 0.06
12_T 174_I 0.76 0.06
151_R 238_H 0.76 0.06
159_P 234_V 0.75 0.05
164_G 201_S 0.75 0.05
90_I 208_G 0.75 0.05
64_A 32_L 0.75 0.05
166_G 222_R 0.75 0.05
159_P 119_I 0.74 0.05
11_E 44_V 0.74 0.05
199_P 252_T 0.74 0.05
49_G 180_P 0.74 0.05
107_A 176_A 0.74 0.05
115_Q 197_P 0.74 0.05
133_Q 133_K 0.74 0.05
174_P 110_R 0.74 0.05
170_T 243_I 0.74 0.05
117_V 277_P 0.74 0.05
116_V 56_T 0.74 0.05
53_I 224_L 0.73 0.05
33_L 2_L 0.73 0.05
48_P 119_I 0.73 0.05
9_I 227_H 0.73 0.05
50_M 181_E 0.73 0.05
167_G 299_F 0.73 0.05
195_A 122_P 0.72 0.05
12_T 259_A 0.72 0.05
63_L 293_Q 0.72 0.04
39_D 244_V 0.72 0.04
149_P 223_E 0.72 0.04
50_M 223_E 0.72 0.04
55_V 161_E 0.71 0.04
129_F 226_S 0.71 0.04
164_G 236_V 0.71 0.04
56_I 231_P 0.71 0.04
102_L 245_L 0.71 0.04
92_V 31_A 0.71 0.04
151_R 222_R 0.71 0.04
136_F 22_R 0.71 0.04
132_F 250_Q 0.71 0.04
50_M 249_A 0.71 0.04
13_A 272_I 0.70 0.04
15_V 227_H 0.70 0.04
177_T 136_I 0.70 0.04
55_V 136_I 0.70 0.04
110_G 76_G 0.70 0.04
9_I 259_A 0.70 0.04
51_N 180_P 0.70 0.04
126_V 36_A 0.70 0.04
46_A 302_L 0.70 0.04
50_M 207_M 0.70 0.04
127_V 259_A 0.70 0.04
199_P 247_N 0.69 0.04
9_I 245_L 0.69 0.04
9_I 229_L 0.69 0.04
57_L 197_P 0.69 0.04
154_P 255_Y 0.69 0.04
190_S 202_S 0.69 0.04
15_V 228_G 0.69 0.04
159_P 115_V 0.69 0.04
164_G 252_T 0.69 0.04
55_V 65_E 0.69 0.04
57_L 213_G 0.69 0.04
169_Q 257_R 0.69 0.04
154_P 213_G 0.69 0.04
204_P 31_A 0.68 0.04
110_G 166_K 0.68 0.04
144_E 95_K 0.68 0.04
132_F 253_G 0.68 0.04
77_E 174_I 0.68 0.04
137_P 58_G 0.68 0.04
51_N 227_H 0.68 0.04
166_G 181_E 0.68 0.04
210_F 258_I 0.68 0.04
51_N 181_E 0.68 0.04
128_W 250_Q 0.68 0.04
57_L 263_E 0.68 0.04
191_L 216_L 0.68 0.04
192_F 270_A 0.68 0.04
37_L 111_S 0.68 0.04
45_E 116_A 0.68 0.04
36_R 132_L 0.67 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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