May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YBGJ - Uncharacterized protein YbgJ
UniProt: P0AAV4 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13306
Length: 218 (215)
Sequences: 1268
Seq/Len: 5.90
YBGJ
Paralog alert: 0.24 [within 20: 0.01] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
121_S 212_P 3.641 1.00
118_E 122_S 3.44 1.00
115_Q 118_E 2.962 1.00
124_E 207_S 2.922 1.00
159_P 162_S 2.817 1.00
89_E 211_V 2.722 1.00
103_A 113_E 2.702 1.00
119_L 145_Q 2.642 1.00
173_Y 179_G 2.524 1.00
94_Y 120_H 2.494 1.00
128_W 140_G 2.463 1.00
89_E 209_R 2.457 1.00
151_R 182_Q 2.403 1.00
114_K 118_E 2.382 1.00
127_V 202_L 2.226 1.00
112_S 115_Q 2.193 1.00
105_V 116_V 2.059 1.00
109_C 148_T 2.045 1.00
157_L 176_A 2.034 1.00
86_R 206_D 1.926 1.00
119_L 146_L 1.902 1.00
164_G 173_Y 1.82 1.00
164_G 179_G 1.808 1.00
104_V 151_R 1.703 1.00
57_L 64_A 1.68 1.00
164_G 182_Q 1.652 1.00
87_F 124_E 1.644 1.00
119_L 143_P 1.637 1.00
124_E 209_R 1.615 0.99
15_V 49_G 1.614 0.99
193_D 196_R 1.599 0.99
191_L 202_L 1.586 0.99
93_V 186_H 1.559 0.99
136_F 171_G 1.557 0.99
102_L 113_E 1.546 0.99
40_M 43_V 1.542 0.99
188_S 213_Q 1.527 0.99
172_V 191_L 1.515 0.99
10_G 13_A 1.482 0.99
63_L 66_D 1.438 0.99
90_I 187_T 1.436 0.99
36_R 74_W 1.415 0.98
120_H 170_T 1.357 0.98
6_C 75_W 1.356 0.98
129_F 204_P 1.349 0.98
93_V 98_G 1.347 0.97
97_A 215_E 1.317 0.97
111_L 119_L 1.307 0.97
173_Y 177_T 1.28 0.96
91_P 189_L 1.267 0.96
49_G 129_F 1.241 0.95
50_M 169_Q 1.226 0.95
141_S 171_G 1.207 0.94
9_I 54_T 1.203 0.94
87_F 207_S 1.202 0.94
120_H 184_I 1.191 0.94
62_S 67_A 1.186 0.94
117_V 212_P 1.175 0.93
109_C 146_L 1.169 0.93
34_A 46_A 1.164 0.93
164_G 171_G 1.164 0.93
46_A 53_I 1.163 0.93
103_A 107_A 1.149 0.92
55_V 71_L 1.13 0.91
49_G 52_N 1.124 0.91
90_I 172_V 1.12 0.91
117_V 121_S 1.112 0.91
132_F 173_Y 1.105 0.90
92_V 163_V 1.095 0.90
142_L 166_G 1.092 0.89
41_P 61_E 1.084 0.89
190_S 193_D 1.073 0.88
18_L 75_W 1.072 0.88
43_V 62_S 1.072 0.88
122_S 143_P 1.066 0.88
50_M 128_W 1.058 0.87
105_V 148_T 1.055 0.87
139_L 208_V 1.051 0.87
66_D 70_R 1.049 0.87
7_Y 17_E 1.045 0.87
13_A 54_T 1.042 0.86
173_Y 183_L 1.039 0.86
155_R 173_Y 1.038 0.86
132_F 179_G 1.035 0.86
35_Q 38_V 1.032 0.86
133_Q 177_T 1.032 0.86
140_G 169_Q 1.026 0.85
15_V 54_T 1.02 0.85
42_N 67_A 1.02 0.85
125_Y 136_F 1.015 0.84
93_V 188_S 1.012 0.84
43_V 67_A 1.003 0.83
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2phcB10.98171000.017Contact Map0.713
3mmlB40.93581000.104Contact Map0.738
3oepA10.93121000.111Contact Map0.754
3va7A10.97711000.128Contact Map0.658
2zp2A20.61011000.254Contact Map0.688
2kwaA10.394599.60.785Contact Map0.553
1ws8A40.21130.50.956Contact Map0.05
2cbpA10.183520.90.96Contact Map0
1f56A30.160618.40.961Contact Map0
1jerA10.220217.50.961Contact Map0.051
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.6227 seconds.