May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

DPO3B - YBCJ
UniProt: P0A988 - P0AAS7
Length: 436
Sequences: 287
Seq/Len: 0.66
I_Prob: 0.00

DPO3B - DNA polymerase III subunit beta
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DPO3B
YBCJ - Uncharacterized protein YbcJ
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBCJ
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
315_M 48_R 1.36 0.00
104_S 51_C 1.35 0.00
30_L 49_K 1.17 0.00
91_Q 3_T 1.16 0.00
110_T 50_R 1.15 0.00
329_N 38_Q 1.15 0.00
361_V 16_D 1.15 0.00
65_P 59_V 1.14 0.00
242_P 13_E 1.11 0.00
244_Y 15_C 1.11 0.00
31_G 46_E 1.10 0.00
340_L 48_R 1.09 0.00
257_E 26_S 1.07 0.00
120_D 50_R 1.07 0.00
2_K 59_V 1.07 0.00
79_C 46_E 1.06 0.00
288_N 54_V 1.06 0.00
25_P 16_D 1.06 0.00
35_L 51_C 1.03 0.00
304_E 48_R 1.02 0.00
359_Y 13_E 1.02 0.00
154_Y 68_V 1.02 0.00
332_K 16_D 1.01 0.00
353_A 55_A 1.00 0.00
55_A 17_L 0.99 0.00
84_E 11_H 0.99 0.00
108_L 50_R 0.98 0.00
178_A 64_H 0.98 0.00
162_T 17_L 0.98 0.00
221_N 53_I 0.97 0.00
315_M 51_C 0.97 0.00
40_G 26_S 0.96 0.00
304_E 46_E 0.95 0.00
110_T 49_K 0.95 0.00
53_M 50_R 0.95 0.00
261_D 11_H 0.95 0.00
174_G 13_E 0.93 0.00
346_S 53_I 0.92 0.00
306_L 17_L 0.92 0.00
79_C 9_H 0.91 0.00
22_G 51_C 0.91 0.00
101_S 34_I 0.91 0.00
207_L 58_T 0.90 0.00
209_G 22_G 0.90 0.00
42_L 26_S 0.90 0.00
203_L 28_A 0.90 0.00
78_I 30_A 0.90 0.00
239_G 46_E 0.90 0.00
167_L 15_C 0.90 0.00
310_Y 25_E 0.89 0.00
223_I 5_S 0.89 0.00
20_P 48_R 0.89 0.00
359_Y 15_C 0.89 0.00
138_L 26_S 0.88 0.00
190_S 59_V 0.88 0.00
212_N 56_G 0.88 0.00
37_V 63_G 0.88 0.00
329_N 60_S 0.88 0.00
20_P 44_A 0.88 0.00
352_A 58_T 0.87 0.00
222_N 61_F 0.87 0.00
188_L 51_C 0.87 0.00
338_M 55_A 0.87 0.00
360_V 50_R 0.87 0.00
90_V 12_V 0.87 0.00
272_I 42_D 0.86 0.00
343_S 10_P 0.86 0.00
33_L 12_V 0.85 0.00
181_S 63_G 0.85 0.00
36_Q 26_S 0.85 0.00
158_M 13_E 0.85 0.00
290_L 54_V 0.85 0.00
241_F 24_S 0.85 0.00
162_T 24_S 0.85 0.00
119_L 50_R 0.85 0.00
35_L 10_P 0.85 0.00
102_G 28_A 0.84 0.00
190_S 5_S 0.84 0.00
321_V 39_V 0.84 0.00
20_P 50_R 0.84 0.00
306_L 47_T 0.84 0.00
120_D 30_A 0.84 0.00
248_L 68_V 0.84 0.00
23_G 26_S 0.84 0.00
88_I 29_Q 0.84 0.00
106_F 36_E 0.84 0.00
241_F 34_I 0.83 0.00
332_K 10_P 0.83 0.00
361_V 46_E 0.83 0.00
217_Q 51_C 0.83 0.00
82_L 18_L 0.83 0.00
60_V 62_A 0.83 0.00
3_F 20_L 0.83 0.00
353_A 45_V 0.83 0.00
247_V 13_E 0.83 0.00
117_P 49_K 0.82 0.00
271_A 8_K 0.82 0.00
24_R 63_G 0.82 0.00
305_I 5_S 0.82 0.00
348_Q 56_G 0.82 0.00
126_V 39_V 0.82 0.00
277_K 17_L 0.82 0.00
18_S 63_G 0.82 0.00
45_T 50_R 0.81 0.00
17_V 30_A 0.81 0.00
235_K 49_K 0.81 0.00
172_T 13_E 0.81 0.00
67_A 63_G 0.81 0.00
237_V 4_F 0.81 0.00
18_S 8_K 0.81 0.00
243_D 62_A 0.81 0.00
273_L 61_F 0.81 0.00
262_L 60_S 0.80 0.00
135_M 2_A 0.80 0.00
42_L 33_A 0.80 0.00
256_L 56_G 0.80 0.00
7_R 30_A 0.80 0.00
111_L 29_Q 0.80 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0639 seconds.