May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
CLPS - LFTR
UniProt: P0A8Q6 - P0A8P1
Length: 340
Sequences: 222
Seq/Len: 0.67
I_Prob: 0.83
CLPS - ATP-dependent Clp protease adapter protein ClpS
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: CLPS 		LFTR - Leucyl/phenylalanyl-tRNA--protein transferase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LFTR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
85_V 170_L 2.25 0.83
46_V 203_P 1.49 0.28
61_L 177_F 1.47 0.26
103_L 170_L 1.37 0.20
19_R 207_Y 1.37 0.20
87_M 147_V 1.25 0.13
78_A 154_C 1.23 0.12
76_F 9_H 1.22 0.12
100_L 191_N 1.21 0.11
61_L 73_H 1.21 0.11
95_N 56_I 1.19 0.11
88_V 76_R 1.19 0.10
61_L 173_F 1.17 0.10
97_H 23_P 1.16 0.09
75_V 51_S 1.15 0.09
78_A 5_Q 1.14 0.09
53_Y 168_T 1.11 0.08
87_M 3_L 1.11 0.08
97_H 134_V 1.07 0.07
97_H 20_L 1.06 0.07
102_T 170_L 1.05 0.06
33_V 92_N 1.05 0.06
75_V 84_R 1.04 0.06
45_D 144_M 1.04 0.06
21_A 205_R 1.03 0.06
77_T 103_A 1.02 0.06
71_A 29_L 1.00 0.05
50_F 23_P 1.00 0.05
71_A 132_I 0.99 0.05
93_R 66_V 0.99 0.05
101_C 135_W 0.99 0.05
95_N 147_V 0.99 0.05
45_D 80_R 0.98 0.04
70_K 171_L 0.98 0.04
44_I 72_L 0.98 0.04
65_V 34_S 0.97 0.04
89_N 112_I 0.97 0.04
75_V 90_T 0.96 0.04
23_K 18_G 0.95 0.04
106_A 84_R 0.95 0.04
65_V 116_V 0.95 0.04
49_K 202_I 0.94 0.04
67_Y 154_C 0.94 0.04
83_T 211_L 0.94 0.04
102_T 160_S 0.93 0.04
23_K 168_T 0.93 0.04
22_L 39_L 0.93 0.04
91_Y 187_C 0.92 0.04
82_E 57_L 0.92 0.04
53_Y 194_T 0.91 0.03
59_T 75_S 0.91 0.03
76_F 40_M 0.91 0.03
71_A 207_Y 0.91 0.03
37_Y 37_R 0.90 0.03
76_F 149_Q 0.90 0.03
33_V 176_E 0.90 0.03
92_A 124_H 0.90 0.03
101_C 110_T 0.90 0.03
76_F 121_H 0.90 0.03
76_F 103_A 0.90 0.03
60_Q 20_L 0.90 0.03
76_F 86_P 0.89 0.03
29_K 224_W 0.89 0.03
103_L 117_V 0.89 0.03
33_V 191_N 0.89 0.03
19_R 93_Y 0.89 0.03
45_D 76_R 0.88 0.03
22_L 6_L 0.88 0.03
50_F 191_N 0.88 0.03
46_V 100_E 0.88 0.03
63_L 23_P 0.88 0.03
90_K 216_L 0.87 0.03
76_F 96_G 0.87 0.03
14_A 116_V 0.87 0.03
54_D 52_P 0.87 0.03
70_K 112_I 0.86 0.03
102_T 112_I 0.86 0.03
83_T 77_S 0.86 0.03
41_E 67_L 0.86 0.03
79_E 34_S 0.86 0.03
39_P 3_L 0.86 0.03
57_R 107_E 0.86 0.03
20_D 180_H 0.85 0.03
33_V 154_C 0.85 0.03
95_N 189_V 0.85 0.03
33_V 227_R 0.85 0.03
18_V 171_L 0.85 0.03
28_Y 15_S 0.85 0.02
94_E 210_Y 0.85 0.02
60_Q 51_S 0.84 0.02
93_R 50_F 0.84 0.02
89_N 224_W 0.84 0.02
52_S 168_T 0.84 0.02
72_I 79_K 0.84 0.02
39_P 134_V 0.84 0.02
60_Q 160_S 0.84 0.02
86_A 214_M 0.84 0.02
50_F 134_V 0.84 0.02
73_C 26_L 0.83 0.02
95_N 39_L 0.83 0.02
79_E 190_L 0.83 0.02
17_K 9_H 0.83 0.02
29_K 77_S 0.83 0.02
15_E 78_M 0.83 0.02
101_C 204_R 0.82 0.02
73_C 76_R 0.82 0.02
71_A 107_E 0.82 0.02
44_I 185_I 0.82 0.02
82_E 76_R 0.82 0.02
3_K 11_I 0.82 0.02
78_A 16_P 0.82 0.02
82_E 78_M 0.81 0.02
46_V 134_V 0.81 0.02
79_E 5_Q 0.81 0.02
91_Y 23_P 0.81 0.02
65_V 70_E 0.81 0.02
80_V 108_E 0.81 0.02
33_V 223_F 0.80 0.02
103_L 73_H 0.80 0.02
44_I 2_R 0.80 0.02
27_M 195_A 0.80 0.02
63_L 124_H 0.80 0.02
48_Q 184_L 0.80 0.02
76_F 119_A 0.79 0.02
80_V 196_S 0.79 0.02
21_A 181_G 0.79 0.02
71_A 10_S 0.79 0.02
102_T 37_R 0.79 0.02
85_V 37_R 0.78 0.02
94_E 69_P 0.78 0.02
88_V 204_R 0.78 0.02
83_T 80_R 0.78 0.02
77_T 150_G 0.78 0.02
96_E 99_I 0.78 0.02
53_Y 101_G 0.77 0.02
44_I 66_V 0.77 0.02
41_E 162_M 0.77 0.02
40_M 30_G 0.77 0.02
23_K 172_V 0.77 0.02
39_P 20_L 0.77 0.02
14_A 50_F 0.77 0.02
31_I 147_V 0.76 0.02
92_A 76_R 0.76 0.02
86_A 199_A 0.76 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0384 seconds.