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OPENSEQ.org

RUVX - YQGE
UniProt: P0A8I1 - P0A8W5
Length: 325
Sequences: 303
Seq/Len: 0.94
I_Prob: 0.01

RUVX - Putative Holliday junction resolvase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RUVX
YQGE - UPF0301 protein YqgE
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YQGE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
70_Q 4_Q 1.44 0.01
99_S 47_K 1.39 0.01
71_P 6_H 1.28 0.00
78_K 146_A 1.28 0.00
94_H 23_V 1.25 0.00
128_I 164_D 1.23 0.00
76_A 160_T 1.22 0.00
131_E 115_L 1.22 0.00
4_T 184_A 1.17 0.00
6_L 109_R 1.17 0.00
5_L 73_M 1.17 0.00
76_A 37_I 1.14 0.00
26_T 31_T 1.13 0.00
85_G 101_D 1.12 0.00
89_V 171_K 1.12 0.00
17_V 17_P 1.10 0.00
69_E 56_K 1.10 0.00
80_A 126_V 1.08 0.00
58_I 142_I 1.08 0.00
25_G 14_L 1.07 0.00
97_R 187_A 1.07 0.00
123_S 187_A 1.05 0.00
5_L 78_L 1.04 0.00
56_E 157_L 1.04 0.00
118_K 116_G 1.03 0.00
136_Q 38_I 1.03 0.00
84_H 161_P 1.02 0.00
129_I 27_C 1.02 0.00
74_A 5_H 1.02 0.00
61_L 168_E 1.01 0.00
19_V 46_L 1.01 0.00
92_K 73_M 1.01 0.00
85_G 145_N 1.00 0.00
53_Q 26_I 1.00 0.00
7_A 52_L 1.00 0.00
42_W 170_A 1.00 0.00
133_Y 60_E 0.99 0.00
100_T 11_M 0.98 0.00
53_Q 6_H 0.98 0.00
43_N 135_K 0.98 0.00
53_Q 72_V 0.98 0.00
76_A 81_D 0.97 0.00
27_A 9_I 0.97 0.00
42_W 166_W 0.96 0.00
47_R 142_I 0.96 0.00
40_P 35_M 0.96 0.00
32_A 96_S 0.95 0.00
55_D 57_I 0.95 0.00
121_V 100_S 0.94 0.00
86_R 101_D 0.94 0.00
97_R 152_A 0.94 0.00
17_V 186_H 0.94 0.00
125_S 22_S 0.94 0.00
8_F 139_E 0.94 0.00
65_M 55_L 0.93 0.00
33_I 155_N 0.93 0.00
58_I 164_D 0.92 0.00
33_I 14_L 0.92 0.00
50_K 92_N 0.91 0.00
70_Q 104_V 0.91 0.00
45_I 153_D 0.91 0.00
66_D 9_I 0.91 0.00
131_E 23_V 0.91 0.00
55_D 37_I 0.90 0.00
58_I 73_M 0.90 0.00
19_V 128_L 0.90 0.00
132_S 73_M 0.89 0.00
24_T 37_I 0.89 0.00
50_K 176_D 0.89 0.00
124_A 57_I 0.88 0.00
72_L 38_I 0.88 0.00
128_I 51_I 0.88 0.00
125_S 117_T 0.88 0.00
7_A 150_A 0.88 0.00
71_P 126_V 0.88 0.00
57_I 94_A 0.88 0.00
121_V 35_M 0.87 0.00
125_S 94_A 0.87 0.00
128_I 165_R 0.87 0.00
99_S 175_V 0.86 0.00
118_K 120_Q 0.85 0.00
130_L 156_I 0.84 0.00
131_E 105_M 0.84 0.00
28_R 103_T 0.84 0.00
30_L 81_D 0.83 0.00
22_R 142_I 0.83 0.00
91_V 18_I 0.83 0.00
81_N 24_V 0.83 0.00
81_N 101_D 0.83 0.00
72_L 26_I 0.83 0.00
35_A 121_P 0.83 0.00
106_G 166_W 0.83 0.00
70_Q 166_W 0.82 0.00
100_T 183_V 0.82 0.00
135_E 35_M 0.82 0.00
105_S 94_A 0.82 0.00
80_A 20_R 0.82 0.00
45_I 78_L 0.82 0.00
99_S 23_V 0.82 0.00
91_V 157_L 0.81 0.00
4_T 26_I 0.81 0.00
61_L 171_K 0.81 0.00
102_E 51_I 0.81 0.00
67_G 159_K 0.81 0.00
26_T 126_V 0.81 0.00
5_L 142_I 0.81 0.00
99_S 85_I 0.81 0.00
41_D 170_A 0.81 0.00
38_G 6_H 0.81 0.00
95_D 152_A 0.81 0.00
77_R 171_K 0.81 0.00
125_S 168_E 0.81 0.00
10_F 126_V 0.80 0.00
41_D 166_W 0.80 0.00
37_D 1_M 0.80 0.00
114_R 125_L 0.80 0.00
121_V 55_L 0.79 0.00
100_T 166_W 0.79 0.00
54_P 139_E 0.79 0.00
10_F 38_I 0.79 0.00
100_T 117_T 0.79 0.00
85_G 28_E 0.79 0.00
67_G 11_M 0.79 0.00
102_E 97_I 0.79 0.00
129_I 150_A 0.78 0.00
17_V 149_T 0.78 0.00
48_L 149_T 0.78 0.00
78_K 132_S 0.78 0.00
12_T 82_R 0.78 0.00
124_A 26_I 0.77 0.00
80_A 14_L 0.77 0.00
50_K 182_G 0.77 0.00
45_I 38_I 0.77 0.00
64_N 55_L 0.77 0.00
75_R 82_R 0.77 0.00
99_S 104_V 0.77 0.00
114_R 44_E 0.77 0.00
72_L 180_M 0.76 0.00
95_D 29_H 0.76 0.00
132_S 109_R 0.76 0.00
58_I 89_P 0.76 0.00
48_L 109_R 0.76 0.00
123_S 51_I 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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