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OPENSEQ.org

RNH - YAFS
UniProt: P0A7Y4 - P75672
Length: 395
Sequences: 238
Seq/Len: 0.61
I_Prob: 0.00

RNH - Ribonuclease HI
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNH
YAFS - Uncharacterized protein YafS
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YAFS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
8_F 124_V 1.51 0.00
55_A 87_A 1.25 0.00
127_H 102_W 1.24 0.00
152_Q 224_R 1.23 0.00
63_C 204_A 1.23 0.00
52_A 122_W 1.22 0.00
75_R 64_H 1.21 0.00
35_F 48_I 1.18 0.00
127_H 205_R 1.18 0.00
111_L 37_F 1.16 0.00
97_P 98_H 1.15 0.00
55_A 187_K 1.12 0.00
82_I 55_I 1.11 0.00
82_I 51_L 1.10 0.00
82_I 44_H 1.09 0.00
101_V 126_S 1.09 0.00
52_A 205_R 1.07 0.00
122_K 96_L 1.07 0.00
110_A 37_F 1.07 0.00
112_G 124_V 1.07 0.00
115_Q 109_L 1.06 0.00
74_V 103_C 1.06 0.00
68_S 213_L 1.05 0.00
87_K 40_M 1.05 0.00
7_I 115_R 1.05 0.00
108_D 16_W 1.04 0.00
97_P 42_G 1.04 0.00
97_P 100_L 1.04 0.00
116_I 70_A 1.02 0.00
102_D 167_N 1.02 0.00
91_K 46_L 1.01 0.00
50_M 45_L 1.00 0.00
89_G 35_P 1.00 0.00
102_D 81_P 1.00 0.00
12_S 134_M 1.00 0.00
40_T 219_S 0.99 0.00
88_R 82_L 0.98 0.00
125_A 123_L 0.98 0.00
32_E 208_T 0.98 0.00
33_K 94_C 0.97 0.00
153_V 6_V 0.97 0.00
24_A 12_A 0.97 0.00
66_I 79_A 0.96 0.00
74_V 98_H 0.96 0.00
93_A 199_L 0.95 0.00
5_V 38_T 0.95 0.00
122_K 186_G 0.94 0.00
62_H 224_R 0.94 0.00
113_Q 19_L 0.94 0.00
95_K 87_A 0.94 0.00
33_K 148_P 0.93 0.00
102_D 51_L 0.93 0.00
8_F 177_H 0.93 0.00
95_K 56_N 0.93 0.00
8_F 178_V 0.93 0.00
113_Q 220_K 0.93 0.00
24_A 144_R 0.92 0.00
38_G 51_L 0.92 0.00
105_Q 168_F 0.92 0.00
102_D 128_F 0.92 0.00
23_G 161_D 0.92 0.00
32_E 86_F 0.92 0.00
33_K 202_I 0.92 0.00
95_K 63_S 0.92 0.00
61_E 200_Q 0.92 0.00
35_F 53_A 0.91 0.00
8_F 164_S 0.91 0.00
80_Q 116_V 0.91 0.00
55_A 44_H 0.90 0.00
152_Q 234_Q 0.90 0.00
82_I 54_E 0.90 0.00
140_A 154_F 0.90 0.00
84_N 194_P 0.90 0.00
37_A 5_R 0.89 0.00
80_Q 38_T 0.89 0.00
63_C 158_R 0.89 0.00
32_E 180_P 0.89 0.00
33_K 18_D 0.88 0.00
67_L 114_D 0.88 0.00
135_E 159_Q 0.88 0.00
67_L 183_K 0.88 0.00
22_Y 19_L 0.88 0.00
152_Q 223_P 0.88 0.00
35_F 234_Q 0.88 0.00
152_Q 227_Q 0.88 0.00
125_A 219_S 0.88 0.00
74_V 207_R 0.88 0.00
89_G 125_I 0.88 0.00
127_H 109_L 0.88 0.00
87_K 88_D 0.88 0.00
101_V 79_A 0.87 0.00
131_E 106_P 0.87 0.00
116_I 96_L 0.87 0.00
152_Q 5_R 0.87 0.00
14_L 21_W 0.86 0.00
22_Y 47_K 0.86 0.00
52_A 207_R 0.86 0.00
23_G 111_R 0.86 0.00
88_R 17_G 0.86 0.00
115_Q 124_V 0.86 0.00
22_Y 17_G 0.86 0.00
102_D 102_W 0.86 0.00
35_F 183_K 0.85 0.00
87_K 33_L 0.85 0.00
133_C 47_K 0.85 0.00
37_A 4_A 0.85 0.00
61_E 5_R 0.85 0.00
111_L 233_R 0.84 0.00
50_M 155_T 0.84 0.00
67_L 107_H 0.84 0.00
50_M 196_L 0.84 0.00
140_A 51_L 0.84 0.00
140_A 105_D 0.84 0.00
67_L 190_N 0.84 0.00
64_E 31_R 0.84 0.00
61_E 227_Q 0.84 0.00
34_T 102_W 0.84 0.00
12_S 13_P 0.84 0.00
89_G 94_C 0.84 0.00
14_L 205_R 0.84 0.00
5_V 163_L 0.84 0.00
122_K 46_L 0.82 0.00
65_V 65_Q 0.82 0.00
141_A 210_P 0.82 0.00
138_R 154_F 0.82 0.00
111_L 167_N 0.82 0.00
105_Q 226_R 0.82 0.00
52_A 194_P 0.82 0.00
37_A 236_R 0.81 0.00
153_V 235_C 0.81 0.00
35_F 229_V 0.81 0.00
111_L 21_W 0.81 0.00
108_D 111_R 0.81 0.00
52_A 116_V 0.81 0.00
50_M 214_N 0.81 0.00
82_I 41_Y 0.81 0.00
26_L 123_L 0.81 0.00
114_H 162_W 0.81 0.00
72_Q 43_F 0.81 0.00
58_A 197_G 0.81 0.00
129_E 154_F 0.80 0.00
9_T 43_F 0.80 0.00
152_Q 6_V 0.80 0.00
65_V 170_V 0.80 0.00
22_Y 13_P 0.80 0.00
74_V 124_V 0.80 0.00
72_Q 132_S 0.80 0.00
53_I 138_K 0.80 0.00
33_K 86_F 0.80 0.00
80_Q 144_R 0.80 0.00
36_S 60_C 0.80 0.00
96_K 27_K 0.80 0.00
82_I 30_E 0.79 0.00
2_L 123_L 0.79 0.00
122_K 174_S 0.79 0.00
19_P 155_T 0.79 0.00
79_T 164_S 0.79 0.00
112_G 59_A 0.79 0.00
49_L 125_I 0.79 0.00
88_R 203_V 0.79 0.00
65_V 204_A 0.79 0.00
37_A 234_Q 0.79 0.00
64_E 131_I 0.79 0.00
58_A 116_V 0.78 0.00
60_K 131_I 0.78 0.00
86_K 16_W 0.78 0.00
153_V 227_Q 0.78 0.00
143_N 97_A 0.78 0.00
5_V 88_D 0.78 0.00
99_K 194_P 0.78 0.00
65_V 130_P 0.78 0.00
84_N 222_K 0.78 0.00
78_I 94_C 0.77 0.00
110_A 212_T 0.77 0.00
110_A 194_P 0.77 0.00
147_E 236_R 0.77 0.00
152_Q 7_P 0.77 0.00
6_E 156_L 0.77 0.00
147_E 225_I 0.77 0.00
24_A 65_Q 0.77 0.00
35_F 62_V 0.77 0.00
12_S 21_W 0.76 0.00
88_R 89_K 0.76 0.00
34_T 229_V 0.76 0.00
27_R 95_L 0.76 0.00
110_A 61_A 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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