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OPENSEQ.org

RS2 - UPPS
UniProt: P0A7V0 - P60472
Length: 494
Sequences: 613
Seq/Len: 1.33
I_Prob: 0.00

RS2 - 30S ribosomal protein S2
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RS2
UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
80_V 129_A 1.15 0.00
65_G 29_G 1.07 0.00
100_M 93_L 1.03 0.00
65_G 39_R 1.03 0.00
87_C 98_K 0.98 0.00
90_F 92_A 0.98 0.00
139_R 120_L 0.97 0.00
93_N 144_N 0.95 0.00
81_K 52_R 0.94 0.00
198_F 187_A 0.94 0.00
185_A 201_I 0.93 0.00
196_V 171_Q 0.93 0.00
161_L 44_K 0.91 0.00
158_P 216_F 0.91 0.00
222_R 93_L 0.90 0.00
117_L 44_K 0.88 0.00
184_F 141_I 0.88 0.00
139_R 195_T 0.88 0.00
44_E 143_A 0.88 0.00
170_H 212_A 0.87 0.00
91_F 152_V 0.87 0.00
224_G 182_C 0.87 0.00
87_C 92_A 0.85 0.00
46_T 67_L 0.85 0.00
92_V 243_F 0.85 0.00
22_Y 150_D 0.84 0.00
147_S 89_F 0.84 0.00
200_I 228_D 0.84 0.00
89_Q 177_L 0.83 0.00
100_M 89_F 0.83 0.00
32_F 184_H 0.83 0.00
116_D 153_Q 0.83 0.00
173_I 91_W 0.81 0.00
34_A 246_T 0.81 0.00
39_H 237_A 0.81 0.00
178_N 201_I 0.80 0.00
135_L 216_F 0.80 0.00
171_I 140_N 0.80 0.00
163_V 21_V 0.79 0.00
100_M 207_W 0.79 0.00
142_E 138_T 0.79 0.00
112_K 201_I 0.78 0.00
202_G 218_D 0.78 0.00
30_F 121_Q 0.78 0.00
111_I 125_R 0.78 0.00
185_A 62_I 0.78 0.00
210_V 172_I 0.77 0.00
37_K 60_N 0.77 0.00
64_K 24_I 0.77 0.00
192_D 105_V 0.77 0.00
127_D 135_T 0.77 0.00
185_A 192_V 0.77 0.00
180_G 98_K 0.77 0.00
116_D 150_D 0.77 0.00
118_E 186_L 0.76 0.00
187_V 100_L 0.76 0.00
202_G 96_E 0.76 0.00
185_A 44_K 0.76 0.00
184_F 92_A 0.76 0.00
153_D 106_R 0.76 0.00
115_K 52_R 0.76 0.00
196_V 116_F 0.76 0.00
107_V 68_Y 0.76 0.00
90_F 188_P 0.76 0.00
157_L 199_H 0.75 0.00
5_S 37_K 0.75 0.00
186_I 48_K 0.75 0.00
163_V 228_D 0.75 0.00
120_Q 107_L 0.75 0.00
222_R 201_I 0.75 0.00
119_T 85_L 0.75 0.00
87_C 54_V 0.75 0.00
86_S 236_F 0.75 0.00
58_N 95_S 0.74 0.00
219_A 139_L 0.74 0.00
224_G 90_V 0.74 0.00
63_R 60_N 0.74 0.00
100_M 124_I 0.74 0.00
210_V 76_N 0.74 0.00
80_V 123_R 0.74 0.00
86_S 37_K 0.74 0.00
4_V 103_H 0.74 0.00
62_S 21_V 0.74 0.00
61_A 105_V 0.73 0.00
115_K 39_R 0.73 0.00
90_F 219_V 0.73 0.00
221_V 139_L 0.73 0.00
12_A 21_V 0.73 0.00
178_N 216_F 0.73 0.00
75_A 150_D 0.73 0.00
196_V 133_G 0.72 0.00
80_V 49_S 0.72 0.00
59_K 184_H 0.72 0.00
142_E 101_H 0.72 0.00
135_L 72_S 0.72 0.00
167_D 123_R 0.72 0.00
168_H 116_F 0.72 0.00
5_S 231_G 0.71 0.00
199_V 236_F 0.71 0.00
118_E 64_A 0.71 0.00
139_R 198_E 0.71 0.00
8_D 38_I 0.71 0.00
140_E 36_G 0.71 0.00
21_R 140_N 0.71 0.00
37_K 116_F 0.71 0.00
199_V 135_T 0.71 0.00
86_S 35_Q 0.71 0.00
127_D 82_V 0.70 0.00
105_K 128_E 0.70 0.00
100_M 104_N 0.70 0.00
187_V 147_G 0.70 0.00
75_A 116_F 0.69 0.00
50_F 143_A 0.69 0.00
224_G 209_I 0.69 0.00
139_R 50_V 0.69 0.00
90_F 183_M 0.69 0.00
224_G 205_L 0.69 0.00
22_Y 149_W 0.69 0.00
77_S 181_V 0.69 0.00
108_R 80_Q 0.69 0.00
88_D 113_T 0.69 0.00
189_T 91_W 0.69 0.00
185_A 36_G 0.69 0.00
48_P 212_A 0.69 0.00
110_S 216_F 0.68 0.00
174_K 137_L 0.68 0.00
49_M 236_F 0.68 0.00
92_V 108_R 0.68 0.00
30_F 76_N 0.68 0.00
80_V 51_R 0.68 0.00
28_K 101_H 0.68 0.00
92_V 110_I 0.68 0.00
57_L 189_V 0.68 0.00
3_T 68_Y 0.68 0.00
135_L 68_Y 0.68 0.00
141_L 144_N 0.68 0.00
61_A 89_F 0.67 0.00
28_K 67_L 0.67 0.00
130_T 182_C 0.67 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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