May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
RIBA - RISA
UniProt: P0A7I7 - P0AFU8
Length: 409
Sequences: 740
Seq/Len: 1.90
I_Prob: 0.00
RIBA - GTP cyclohydrolase-2
Paralog alert: 0.21 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: RIBA 		RISA - Riboflavin synthase
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RISA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
60_L 44_H 1.01 0.00
110_Q 142_I 0.93 0.00
145_V 161_L 0.91 0.00
47_L 143_D 0.89 0.00
27_A 67_T 0.82 0.00
24_E 103_I 0.81 0.00
148_L 161_L 0.80 0.00
25_E 161_L 0.77 0.00
106_A 159_V 0.77 0.00
85_I 9_T 0.76 0.00
75_L 15_I 0.76 0.00
170_P 141_G 0.72 0.00
75_L 69_R 0.72 0.00
134_A 90_F 0.71 0.00
85_I 12_L 0.70 0.00
195_N 126_Q 0.70 0.00
85_I 161_L 0.70 0.00
180_E 149_V 0.70 0.00
195_N 103_I 0.70 0.00
82_G 3_T 0.70 0.00
173_V 118_N 0.69 0.00
58_D 43_A 0.69 0.00
28_T 5_I 0.69 0.00
183_L 133_Y 0.69 0.00
85_I 89_K 0.67 0.00
83_R 191_V 0.67 0.00
31_D 103_I 0.67 0.00
27_A 121_I 0.67 0.00
45_P 193_D 0.66 0.00
60_L 62_D 0.66 0.00
29_G 77_K 0.66 0.00
179_N 98_L 0.65 0.00
140_L 49_L 0.65 0.00
116_E 124_K 0.65 0.00
123_F 164_E 0.65 0.00
109_D 43_A 0.64 0.00
131_T 94_I 0.64 0.00
3_L 33_L 0.63 0.00
120_Q 89_K 0.63 0.00
22_G 95_G 0.63 0.00
60_L 167_E 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.0427 seconds.