| UniProt: | P0AFU8 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11406 | ||
| Length: | 213 (200) | ||
| Sequences: | 1765 | ||
| Seq/Len: | 8.82 |
| RISA
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 89_K | 92_D | 3.594 | 1.00 | |
| 107_A | 123_F | 3.145 | 1.00 | |
| 70_I | 136_Y | 2.995 | 1.00 | |
| 108_E | 124_K | 2.807 | 1.00 | |
| 88_A | 94_I | 2.714 | 1.00 | |
| 143_D | 174_K | 2.557 | 1.00 | |
| 90_F | 98_L | 2.555 | 1.00 | |
| 134_I | 149_V | 2.462 | 1.00 | |
| 11_K | 27_E | 2.39 | 1.00 | |
| 105_T | 130_L | 2.385 | 1.00 | |
| 145_I | 171_L | 2.107 | 1.00 | |
| 142_I | 180_V | 2.069 | 1.00 | |
| 10_A | 84_V | 2.037 | 1.00 | |
| 36_L | 42_V | 2.018 | 1.00 | |
| 132_K | 196_E | 2.015 | 1.00 | |
| 27_E | 57_N | 1.95 | 1.00 | |
| 109_V | 174_K | 1.937 | 1.00 | |
| 13_V | 27_E | 1.903 | 1.00 | |
| 145_I | 170_T | 1.875 | 1.00 | |
| 81_W | 173_K | 1.833 | 1.00 | |
| 76_L | 80_D | 1.826 | 1.00 | |
| 174_K | 178_A | 1.826 | 1.00 | |
| 7_Q | 86_R | 1.82 | 1.00 | |
| 64_M | 160_H | 1.79 | 1.00 | |
| 122_W | 156_R | 1.789 | 1.00 | |
| 53_E | 60_S | 1.781 | 1.00 | |
| 47_C | 71_T | 1.773 | 1.00 | |
| 25_V | 60_S | 1.76 | 1.00 | |
| 110_A | 124_K | 1.756 | 1.00 | |
| 122_W | 158_C | 1.753 | 1.00 | |
| 11_K | 81_W | 1.739 | 1.00 | |
| 164_E | 168_R | 1.725 | 1.00 | |
| 108_E | 179_R | 1.67 | 1.00 | |
| 191_V | 195_V | 1.656 | 1.00 | |
| 90_F | 94_I | 1.648 | 1.00 | |
| 44_H | 59_V | 1.639 | 1.00 | |
| 75_D | 179_R | 1.633 | 1.00 | |
| 109_V | 121_I | 1.633 | 1.00 | |
| 142_I | 182_I | 1.562 | 1.00 | |
| 145_I | 161_L | 1.559 | 1.00 | |
| 112_I | 121_I | 1.558 | 1.00 | |
| 66_E | 137_K | 1.543 | 1.00 | |
| 44_H | 82_V | 1.529 | 1.00 | |
| 37_E | 40_A | 1.493 | 1.00 | |
| 133_Y | 196_E | 1.486 | 1.00 | |
| 98_L | 186_P | 1.484 | 1.00 | |
| 119_R | 166_L | 1.46 | 1.00 | |
| 7_Q | 93_E | 1.459 | 1.00 | |
| 134_I | 157_F | 1.451 | 0.99 | |
| 135_L | 186_P | 1.412 | 0.99 | |
| 99_M | 141_G | 1.403 | 0.99 | |
| 125_V | 182_I | 1.388 | 0.99 | |
| 65_K | 69_R | 1.384 | 0.99 | |
| 151_E | 158_C | 1.38 | 0.99 | |
| 153_T | 156_R | 1.378 | 0.99 | |
| 143_D | 170_T | 1.372 | 0.99 | |
| 23_T | 52_T | 1.364 | 0.99 | |
| 8_G | 28_L | 1.356 | 0.99 | |
| 118_N | 160_H | 1.344 | 0.99 | |
| 124_K | 156_R | 1.34 | 0.99 | |
| 124_K | 155_T | 1.325 | 0.99 | |
| 86_R | 93_E | 1.309 | 0.99 | |
| 135_L | 193_D | 1.299 | 0.99 | |
| 24_H | 63_L | 1.296 | 0.99 | |
| 87_A | 93_E | 1.286 | 0.98 | |
| 171_L | 174_K | 1.284 | 0.98 | |
| 150_G | 158_C | 1.284 | 0.98 | |
| 125_V | 134_I | 1.28 | 0.98 | |
| 142_I | 159_V | 1.273 | 0.98 | |
| 25_V | 58_H | 1.27 | 0.98 | |
| 94_I | 98_L | 1.268 | 0.98 | |
| 109_V | 123_F | 1.262 | 0.98 | |
| 166_L | 172_G | 1.225 | 0.98 | |
| 17_E | 22_R | 1.215 | 0.98 | |
| 9_T | 81_W | 1.211 | 0.98 | |
| 150_G | 160_H | 1.204 | 0.97 | |
| 112_I | 119_R | 1.202 | 0.97 | |
| 45_N | 72_N | 1.193 | 0.97 | |
| 145_I | 174_K | 1.191 | 0.97 | |
| 123_F | 159_V | 1.189 | 0.97 | |
| 135_L | 192_V | 1.184 | 0.97 | |
| 38_T | 164_E | 1.173 | 0.97 | |
| 107_A | 142_I | 1.17 | 0.97 | |
| 120_Q | 158_C | 1.161 | 0.97 | |
| 69_R | 115_S | 1.159 | 0.97 | |
| 36_L | 54_I | 1.155 | 0.96 | |
| 89_K | 94_I | 1.141 | 0.96 | |
| 55_N | 58_H | 1.138 | 0.96 | |
| 65_K | 115_S | 1.135 | 0.96 | |
| 52_T | 62_D | 1.129 | 0.96 | |
| 45_N | 76_L | 1.129 | 0.96 | |
| 121_I | 161_L | 1.128 | 0.96 | |
| 111_K | 122_W | 1.12 | 0.96 | |
| 109_V | 180_V | 1.119 | 0.96 | |
| 35_G | 93_E | 1.115 | 0.95 | |
| 40_A | 95_G | 1.114 | 0.95 | |
| 45_N | 143_D | 1.108 | 0.95 | |
| 77_K | 80_D | 1.094 | 0.95 | |
| 68_L | 73_L | 1.092 | 0.95 | |
| 134_I | 140_I | 1.083 | 0.94 | |
| 12_L | 26_V | 1.082 | 0.94 | |
| 64_M | 150_G | 1.078 | 0.94 | |
| 35_G | 95_G | 1.061 | 0.94 | |
| 112_I | 175_K | 1.043 | 0.93 | |
| 40_A | 93_E | 1.033 | 0.92 | |
| 111_K | 176_L | 1.033 | 0.92 | |
| 88_A | 141_G | 1.031 | 0.92 | |
| 125_V | 157_F | 1.027 | 0.92 | |
| 115_S | 120_Q | 1.024 | 0.92 | |
| 136_Y | 151_E | 1.013 | 0.91 | |
| 161_L | 166_L | 1.001 | 0.91 | |
| 107_A | 182_I | 1 | 0.91 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1i8dA | 3 | 0.9953 | 100 | 0.063 | Contact Map | 0.815 |
| 1kzlA | 1 | 0.9718 | 100 | 0.12 | Contact Map | 0.609 |
| 4e0fA | 3 | 0.9624 | 100 | 0.133 | Contact Map | 0.837 |
| 3a35A | 2 | 0.892 | 100 | 0.165 | Contact Map | 0.695 |
| 3ddyA | 1 | 0.8732 | 100 | 0.176 | Contact Map | 0.722 |
| 3h43A | 12 | 0.3052 | 26.4 | 0.961 | Contact Map | 0.626 |
| 2wg5A | 12 | 0.3099 | 23.3 | 0.962 | Contact Map | 0.707 |
| 2wfwA | 3 | 0.5962 | 13.1 | 0.966 | Contact Map | 0.229 |
| 2f9hA | 2 | 0.4131 | 11.9 | 0.966 | Contact Map | 0.481 |
| 2qcpX | 1 | 0.2676 | 10.6 | 0.967 | Contact Map | 0.612 |
Sequence Conservation (Image Generated using WebLogo v3)