May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RECR - YBAB
UniProt: P0A7H6 - P0A8B5
Length: 310
Sequences: 828
Seq/Len: 2.74
I_Prob: 0.01

RECR - Recombination protein RecR
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECR
YBAB - Nucleoid-associated protein YbaB
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBAB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
112_L 60_S 1.05 0.01
193_L 46_I 1.04 0.01
166_V 67_E 0.97 0.01
109_M 50_H 0.92 0.01
30_F 24_M 0.91 0.01
158_A 101_L 0.90 0.01
176_P 38_G 0.90 0.01
50_A 85_E 0.88 0.01
84_C 38_G 0.88 0.01
148_V 86_E 0.88 0.01
175_V 72_L 0.88 0.01
47_L 79_D 0.86 0.01
98_T 97_S 0.86 0.01
160_L 27_E 0.86 0.01
181_L 38_G 0.84 0.01
127_R 97_S 0.83 0.01
29_A 13_Q 0.81 0.01
157_I 7_L 0.81 0.01
141_I 55_V 0.80 0.01
181_L 39_A 0.79 0.01
118_I 38_G 0.78 0.01
95_I 63_E 0.78 0.01
167_E 96_S 0.78 0.01
123_I 51_N 0.77 0.01
169_S 107_M 0.77 0.01
92_I 28_I 0.76 0.01
176_P 39_A 0.75 0.01
32_L 50_H 0.75 0.00
192_S 16_Q 0.74 0.00
79_E 83_R 0.74 0.00
132_L 61_L 0.73 0.00
165_D 28_I 0.73 0.00
169_S 96_S 0.72 0.00
97_Q 81_A 0.72 0.00
123_I 101_L 0.71 0.00
177_V 12_K 0.71 0.00
177_V 82_R 0.71 0.00
175_V 49_A 0.71 0.00
121_D 23_K 0.71 0.00
74_N 36_E 0.70 0.00
83_I 70_E 0.69 0.00
92_I 77_F 0.69 0.00
189_L 19_E 0.69 0.00
104_R 88_Q 0.68 0.00
41_M 101_L 0.68 0.00
6_L 12_K 0.68 0.00
121_D 44_V 0.68 0.00
169_S 68_M 0.68 0.00
105_Y 13_Q 0.68 0.00
132_L 92_M 0.68 0.00
67_E 54_R 0.67 0.00
111_H 55_V 0.67 0.00
62_T 99_M 0.67 0.00
179_G 14_A 0.67 0.00
85_V 57_I 0.67 0.00
132_L 68_M 0.67 0.00
103_G 8_G 0.67 0.00
102_S 51_N 0.67 0.00
144_T 91_K 0.67 0.00
142_L 36_E 0.66 0.00
129_E 23_K 0.66 0.00
170_R 92_M 0.65 0.00
61_R 9_N 0.65 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0266 seconds.