May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RECF - RNPA
UniProt: P0A7H0 - P0A7Y8
Length: 476
Sequences: 387
Seq/Len: 0.83
I_Prob: 0.00

RECF - DNA replication and repair protein RecF
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECF
RNPA - Ribonuclease P protein component
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RNPA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
84_G 63_N 1.44 0.00
52_F 36_L 1.34 0.00
156_R 17_Q 1.25 0.00
33_G 107_K 1.25 0.00
96_R 11_R 1.23 0.00
255_D 34_T 1.22 0.00
348_F 100_A 1.21 0.00
210_F 112_H 1.15 0.00
177_W 74_R 1.14 0.00
265_V 47_I 1.14 0.00
185_A 68_L 1.13 0.00
241_D 73_F 1.13 0.00
107_E 102_S 1.13 0.00
123_T 18_F 1.12 0.00
85_L 110_R 1.11 0.00
188_I 96_L 1.10 0.00
230_Y 105_L 1.10 0.00
218_F 76_R 1.09 0.00
211_L 71_E 1.08 0.00
162_N 46_R 1.08 0.00
333_S 52_A 1.06 0.00
280_A 107_K 1.06 0.00
124_L 49_L 1.06 0.00
271_R 22_F 1.06 0.00
348_F 87_V 1.06 0.00
158_L 95_D 1.05 0.00
281_L 12_L 1.05 0.00
304_F 34_T 1.04 0.00
298_L 38_R 1.04 0.00
273_Q 90_K 1.03 0.00
304_F 57_R 1.03 0.00
264_P 52_A 1.02 0.00
182_I 93_V 1.01 0.00
107_E 56_V 1.00 0.00
43_I 79_E 1.00 0.00
274_L 90_K 1.00 0.00
256_L 95_D 0.99 0.00
199_I 37_G 0.99 0.00
262_G 110_R 0.98 0.00
100_T 50_T 0.98 0.00
38_S 34_T 0.97 0.00
124_L 96_L 0.96 0.00
19_L 105_L 0.96 0.00
193_A 85_F 0.95 0.00
351_E 16_S 0.95 0.00
196_S 43_G 0.95 0.00
115_Q 109_W 0.94 0.00
255_D 90_K 0.93 0.00
150_A 23_Q 0.93 0.00
37_T 51_V 0.93 0.00
313_R 52_A 0.93 0.00
156_R 43_G 0.93 0.00
218_F 17_Q 0.93 0.00
117_I 57_R 0.92 0.00
151_W 22_F 0.92 0.00
120_E 29_G 0.92 0.00
198_G 70_R 0.92 0.00
196_S 97_D 0.91 0.00
118_T 50_T 0.91 0.00
42_A 82_A 0.91 0.00
251_P 89_A 0.91 0.00
306_S 88_V 0.91 0.00
108_L 108_L 0.91 0.00
74_L 72_S 0.91 0.00
203_M 63_N 0.91 0.00
52_F 51_V 0.91 0.00
62_R 100_A 0.91 0.00
351_E 79_E 0.90 0.00
33_G 56_V 0.90 0.00
3_L 83_M 0.90 0.00
118_T 34_T 0.90 0.00
27_F 85_F 0.90 0.00
16_T 31_P 0.90 0.00
159_K 59_A 0.89 0.00
167_Q 85_F 0.89 0.00
255_D 18_F 0.89 0.00
265_V 14_T 0.89 0.00
17_A 103_E 0.88 0.00
254_A 57_R 0.88 0.00
245_T 11_R 0.88 0.00
331_A 45_P 0.88 0.00
255_D 48_G 0.87 0.00
207_C 30_T 0.87 0.00
273_Q 36_L 0.87 0.00
57_I 52_A 0.86 0.00
96_R 111_R 0.86 0.00
154_L 61_E 0.86 0.00
275_K 88_V 0.85 0.00
175_R 100_A 0.85 0.00
256_L 83_M 0.85 0.00
241_D 75_L 0.85 0.00
160_Q 70_R 0.85 0.00
31_A 70_R 0.85 0.00
313_R 49_L 0.85 0.00
247_T 46_R 0.85 0.00
263_A 108_L 0.84 0.00
282_R 90_K 0.84 0.00
13_N 36_L 0.84 0.00
226_K 82_A 0.84 0.00
94_K 56_V 0.84 0.00
356_T 95_D 0.84 0.00
340_M 31_P 0.84 0.00
323_T 45_P 0.84 0.00
276_L 71_E 0.83 0.00
330_S 17_Q 0.83 0.00
129_P 34_T 0.83 0.00
121_G 57_R 0.83 0.00
200_A 56_V 0.83 0.00
305_A 90_K 0.83 0.00
139_G 90_K 0.83 0.00
83_I 105_L 0.83 0.00
26_N 12_L 0.83 0.00
50_R 90_K 0.83 0.00
84_G 34_T 0.82 0.00
214_F 69_T 0.82 0.00
62_R 70_R 0.82 0.00
156_R 76_R 0.82 0.00
38_S 57_R 0.82 0.00
84_G 66_K 0.82 0.00
96_R 86_V 0.82 0.00
42_A 8_R 0.82 0.00
166_R 103_E 0.82 0.00
211_L 13_L 0.82 0.00
234_L 109_W 0.81 0.00
91_G 11_R 0.81 0.00
120_E 51_V 0.81 0.00
185_A 13_L 0.81 0.00
248_A 25_P 0.81 0.00
129_P 48_G 0.81 0.00
136_L 7_P 0.81 0.00
110_H 36_L 0.81 0.00
240_R 51_V 0.81 0.00
239_E 105_L 0.80 0.00
199_I 20_F 0.80 0.00
143_N 18_F 0.80 0.00
87_K 34_T 0.80 0.00
288_F 89_A 0.80 0.00
21_L 9_E 0.80 0.00
352_K 43_G 0.80 0.00
52_F 18_F 0.80 0.00
253_K 34_T 0.80 0.00
120_E 18_F 0.80 0.00
27_F 42_L 0.80 0.00
283_L 17_Q 0.80 0.00
331_A 59_A 0.80 0.00
282_R 15_P 0.79 0.00
96_R 56_V 0.79 0.00
199_I 8_R 0.79 0.00
33_G 13_L 0.79 0.00
253_K 60_H 0.79 0.00
139_G 29_G 0.79 0.00
318_S 86_V 0.79 0.00
110_H 25_P 0.79 0.00
240_R 66_K 0.79 0.00
180_E 17_Q 0.79 0.00
234_L 28_A 0.79 0.00
269_L 58_R 0.79 0.00
64_E 85_F 0.79 0.00
295_R 110_R 0.79 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0291 seconds.