May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RBFA - RIMP
UniProt: P0A7G2 - P0A8A8
Length: 283
Sequences: 885
Seq/Len: 3.25
I_Prob: 0.02

RBFA - Ribosome-binding factor A
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RBFA
RIMP - Ribosome maturation factor RimP
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIMP
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
78_F 51_C 1.05 0.02
34_M 21_F 1.03 0.02
83_L 41_D 1.01 0.02
31_R 45_G 0.99 0.02
8_P 46_I 0.91 0.01
86_A 106_A 0.91 0.01
71_A 127_V 0.91 0.01
7_R 144_A 0.90 0.01
37_T 69_T 0.90 0.01
53_Y 13_T 0.90 0.01
58_N 99_V 0.90 0.01
113_V 24_V 0.89 0.01
55_T 48_V 0.89 0.01
112_L 55_S 0.88 0.01
53_Y 16_V 0.88 0.01
20_A 101_L 0.88 0.01
11_V 115_G 0.87 0.01
38_V 107_V 0.85 0.01
19_I 84_P 0.85 0.01
52_V 22_E 0.85 0.01
113_V 137_A 0.83 0.01
47_L 63_D 0.82 0.01
73_Q 118_K 0.82 0.01
103_L 55_S 0.81 0.01
74_E 39_Y 0.80 0.01
114_T 101_L 0.80 0.01
73_Q 130_E 0.80 0.01
37_T 56_H 0.79 0.01
53_Y 56_H 0.79 0.01
13_Q 137_A 0.78 0.01
30_P 45_G 0.78 0.01
19_I 85_L 0.78 0.01
78_F 14_A 0.78 0.01
80_R 41_D 0.77 0.01
87_M 90_H 0.77 0.01
21_L 146_L 0.76 0.01
102_S 136_F 0.75 0.01
80_R 37_R 0.75 0.01
55_T 25_G 0.75 0.01
14_E 58_V 0.74 0.01
84_G 67_P 0.74 0.01
26_E 119_A 0.74 0.01
43_M 54_V 0.74 0.01
85_K 121_D 0.73 0.01
62_E 122_G 0.73 0.01
19_I 136_F 0.73 0.01
45_R 81_L 0.73 0.01
81_S 45_G 0.72 0.01
82_L 83_R 0.72 0.01
89_L 22_E 0.72 0.01
53_Y 49_D 0.72 0.01
115_S 81_L 0.71 0.01
11_V 107_V 0.71 0.01
15_M 94_F 0.71 0.01
68_G 108_Q 0.71 0.01
58_N 93_R 0.71 0.01
32_L 2_S 0.70 0.01
112_L 51_C 0.70 0.01
43_M 12_I 0.70 0.01
26_E 127_V 0.70 0.01
106_G 86_F 0.70 0.01
117_V 149_H 0.70 0.01
25_R 53_D 0.70 0.01
48_A 54_V 0.70 0.01
113_V 102_V 0.69 0.01
20_A 31_G 0.69 0.01
42_E 145_N 0.69 0.01
87_M 98_E 0.69 0.01
48_A 119_A 0.69 0.01
89_L 97_E 0.69 0.01
109_M 128_T 0.69 0.01
80_R 150_F 0.68 0.01
31_R 41_D 0.68 0.01
18_E 46_I 0.68 0.01
113_V 85_L 0.68 0.01
30_P 23_L 0.67 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0381 seconds.